Locus 5717

Sequence ID 3R_DroMel_CAF1
Location 14,936,510 – 14,936,630
Length 120
Max. P 0.928106
window9355

overview

Window 5

Location 14,936,510 – 14,936,630
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.50
Mean single sequence MFE -23.58
Consensus MFE -19.69
Energy contribution -20.57
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -1.81
Structure conservation index 0.83
SVM decision value 1.19
SVM RNA-class probability 0.928106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14936510 120 + 27905053
AUAAAUAAAUCUGGGCUACAUUACUAAUCAACUUUCAGCGUUAAUCGCAUCUGGAACUCGUUCCAUCGCCCGCCCGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCGUGGCCAU
............((((.....................(((.....)))...(((((....)))))..))))....(((((((......))..)))))(((((.((....)).)))))... ( -29.80)
>DroSec_CAF1 72220 120 + 1
AUAAAUAAAUCUGGGCUACAUUACUAAUCAACUUUCAGCAUUAAUCUCAUCUGGAACUCGUUCCAUCACCCGCCCGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCGUGGCCAU
............((((........(((((........).))))........(((((....)))))......))))(((((((......))..)))))(((((.((....)).)))))... ( -24.40)
>DroSim_CAF1 65011 120 + 1
AUAAAUAAAUCUGGGCUGCAUUACUAAUCAACUUUCAGCGUUAAUCUCAUCUGGAACUCGUUCCAUCACCCGCCCGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCGUGGCCAU
............((((.((..................))............(((((....)))))......))))(((((((......))..)))))(((((.((....)).)))))... ( -25.67)
>DroEre_CAF1 62891 114 + 1
------AAAUCUAGGCUACAUUACUAAUCAACUUUCAGCGCUAAUCUCAUCUGGAACUCGUUUCAUCACCCGCCCGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCAUGGCCAU
------.......(((((................((((((...........(((((....))))).........)))))).......((((......))))............))))).. ( -19.55)
>DroYak_CAF1 69744 108 + 1
AUAAAUAAAUCUAGGCUUCAUCACUAAUCAGCUUUCAGCGUUA------------ACUCGUUUCAUCACCCGCCUGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCGUGGCUAU
............((((..............((.....))(...------------...)............))))(((((((......))..)))))(((((.((....)).)))))... ( -18.50)
>consensus
AUAAAUAAAUCUGGGCUACAUUACUAAUCAACUUUCAGCGUUAAUCUCAUCUGGAACUCGUUCCAUCACCCGCCCGUUGACCUUUAAUGGCAUCAGCGCCACCAUCUCCAUCGUGGCCAU
.............((((((...............((((((...........(((((....))))).........)))))).......((((......))))...........)))))).. (-19.69 = -20.57 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:42 2006