Locus 5716

Sequence ID 3R_DroMel_CAF1
Location 14,935,514 – 14,935,628
Length 114
Max. P 0.984801
window9354

overview

Window 4

Location 14,935,514 – 14,935,628
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.84
Mean single sequence MFE -37.10
Consensus MFE -32.52
Energy contribution -32.72
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.88
SVM decision value 1.99
SVM RNA-class probability 0.984801
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14935514 114 + 27905053
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGCCGAGUCGUAGAAAGUUGCA------GUUGCAUUUUCAAGUUGCAGCAGUGGCAAUGACGCAGUCGGGAGAAAGA
.(((((((((.......))).(((((((((.(((.(((((......))))).).))...((..(.------((((((.........)))))).)..))......))))))))))))))). ( -36.20)
>DroSec_CAF1 66966 114 + 1
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGUCGAGUCGUAGAAAGUUGCA------GUUGCAUUUUUAAGUUGCAGCAGUGGCAAUGACGCAGUCGGGAGAAAGA
.(((((((((.......))).(((((((((.(((.((((((....)))))).).))...((..(.------((((((.........)))))).)..))......))))))))))))))). ( -37.20)
>DroSim_CAF1 64043 114 + 1
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGUCGAGUCGUAAAAAGUUGCA------GUUGCAUUUUCAAGUUGCAGCAGUGGCAAUGACGCAGUCGGGAGAAAGA
.(((((((((.......))).(((((((((.....((((((....))))))........((..(.------((((((.........)))))).)..))......))))))))))))))). ( -35.90)
>DroEre_CAF1 61902 119 + 1
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGCCGAGUCGUAGAAAGUUGCAGUUGCAGUUGCAU-UUCAAGCUGCAGCAGUGGCAAUGACGCAGUCGGGAGAAAGA
.(((((((((.......))).(((((((((.(((.(((((......))))).).))...((..(.(((((((((....-....))))))))).)..))......))))))))))))))). ( -42.50)
>DroYak_CAF1 68752 113 + 1
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGCCGAGUAGUAGAAAGUUGCA------GUUGCAC-UUCAAGUUGCAGCAGUGGCAAUGACGCAGUCUGGAGAAAGA
....(((.(((((..((.....))((((((.(((.(((((......))))).).))...((..(.------((((((.-.......)))))).)..))......)))))))))))..))) ( -33.70)
>consensus
GUUUUCUGCUCCAUUGAAGCAUUCGAUUGCACUCCACUCGAAACGCCGAGUCGUAGAAAGUUGCA______GUUGCAUUUUCAAGUUGCAGCAGUGGCAAUGACGCAGUCGGGAGAAAGA
.(((((((((.......))).(((((((((.....(((((......))))).((.....(((((.......((((((.........))))))....))))).))))))))))))))))). (-32.52 = -32.72 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:41 2006