| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,935,331 – 14,935,434 |
| Length | 103 |
| Max. P | 0.720696 |
| Location | 14,935,331 – 14,935,434 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.65 |
| Mean single sequence MFE | -27.74 |
| Consensus MFE | -14.21 |
| Energy contribution | -16.69 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14935331 103 + 27905053 --------AAUUUGCAUGCUCAGCUCUUCCACUCAAGUGGAAACUUGGCUGC---------UGCUCCUUCUGCUGCAGUUGCAAUGCCAAUGCUUGAGUAAAUUGACUUCAACUUCAUUU --------........((((((((..((((((....))))))..(((((.((---------(((..(....)..)))))......))))).)).)))))).................... ( -28.50) >DroSec_CAF1 66779 112 + 1 --------AAUUUGCAUGCUCAGCUCUUCCACUCAACUGGAAACUUCGCUGCAGCCCCAUCUGCUCCUUGUGCUGCAGUUGCAAUGCCAAUGCUUGAGUAAAUUGACUUCAACUUCAUUU --------........((((((((..(((((......))))).....((((((((..((.........)).))))))))............)).)))))).................... ( -25.10) >DroSim_CAF1 63856 112 + 1 --------AAUUUGCAUGCUCAGCUCUUCCACUCAACUGGAAACUUCGCUGCAGCCCCAUCUGCUCCUUGUGCUGCAGUUGCAAUGCCAAUGCUUGAGUAAAUUGACUUCAACUUCAUUU --------........((((((((..(((((......))))).....((((((((..((.........)).))))))))............)).)))))).................... ( -25.10) >DroEre_CAF1 61740 103 + 1 AGUG----------------CAGCUCUUCCACUCAACUGGAAACCCCGACGCAGCUCCUGCUGCCCCUUCUGCUGC-GUUGCAAUGUCAAUGCUUGAGUAAAUUGACUUCAACUUCAUUU ...(----------------((((..(((((......)))))........(((((....))))).......)))))-((((.((.((((((..........))))))))))))....... ( -29.80) >DroYak_CAF1 68585 120 + 1 AGUGAAGCAAUUUGCAUGCUCAGCUCUUCCACUCAACUGGAAACCCCGAUGAUGCUCCUCCUGCUCCUUCUGUUGCAGUUGCAAUGUCAAUGCUUCAGUAAAUUGACUUCAACUUCAUUU ..(((((((((((((.((...(((..(((((......))))).....((((.(((.....((((..(....)..))))..))).))))...))).)))))))))).)))))......... ( -30.20) >consensus ________AAUUUGCAUGCUCAGCUCUUCCACUCAACUGGAAACUUCGCUGCAGCCCCAUCUGCUCCUUCUGCUGCAGUUGCAAUGCCAAUGCUUGAGUAAAUUGACUUCAACUUCAUUU ................((((((((..(((((......))))).....((((((((................))))))))............)).)))))).................... (-14.21 = -16.69 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:40 2006