Locus 5711

Sequence ID 3R_DroMel_CAF1
Location 14,934,355 – 14,934,462
Length 107
Max. P 0.576187
window9345

overview

Window 5

Location 14,934,355 – 14,934,462
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.92
Mean single sequence MFE -34.82
Consensus MFE -25.99
Energy contribution -25.39
Covariance contribution -0.60
Combinations/Pair 1.20
Mean z-score -1.59
Structure conservation index 0.75
SVM decision value 0.09
SVM RNA-class probability 0.576187
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14934355 107 - 27905053
AACAGGUACGUGUGAGCUGGUGUGUGUGC----CAGCUAUAUCUUAGA--------AA-CUAUAUCUAUGACGCACACUGUGCGUGGCCAGUGGAAAUCGCCAUACGCCGCUACUCAAUU
.....((((((((((((((((......))----)))))...((.((((--------..-.....)))).))..))))).))))(((((..((((......))))..)))))......... ( -36.50)
>DroSec_CAF1 64252 98 - 1
AACAGGUAUGUGUGAGCUGGUGUGUGUG-------------UCUUAGA--------AA-CUAUACCUAUGACGCGCACUGUGCGUGGCCAGUGGAAAUCGCCAUACGCCGCUACUCAAUU
.(((....))).((((.(((((((((((-------------((.(((.--------..-......))).))))))))).(((..((((..((....)).))))..))).))))))))... ( -32.30)
>DroSim_CAF1 62922 98 - 1
AAAAGGUAUGUGUGAGCUGGUGUGUGUG-------------UCUUAGA--------AA-CUAUACCUAUGACGCGCACUGUGCGUGGCCAGUGGAAAUCGCCAUACGCCGCUACUCAAUU
........((.(((.((....(((((((-------------((.(((.--------..-......))).)))))))))...))(((((..((((......))))..)))))))).))... ( -32.10)
>DroEre_CAF1 60777 120 - 1
AACAGUUACGUGUGCCCCGGUGUGUGUGUAUCUUAGCUGUAUCUUAGGCCUCUAUAUAUCUAUAUCUAUGACGCGCACUGUGCGUGGCCAGUGGAAAUCGCCACACGCCGCUGCUCAAUU
..........((.((..(((((((((.((......(((........)))...............(((((..(((((.....)))))....)))))....)))))))))))..)).))... ( -34.80)
>DroYak_CAF1 67627 107 - 1
AACAGGUACGUGUGCGCUGGUGUGCGUGC----GAGCUACAUCUUGGA--------UA-CUAUAUCUAUGACGCGCACUGUGCGUGGCCAGUGGAAAUCGCCAUACGCCGCUACUCAAUU
.....(((((.((((((.(((((((....----..)).))))).((((--------((-...))))))....)))))))))))(((((..((((......))))..)))))......... ( -38.40)
>consensus
AACAGGUACGUGUGAGCUGGUGUGUGUG______AGCU__AUCUUAGA________AA_CUAUAUCUAUGACGCGCACUGUGCGUGGCCAGUGGAAAUCGCCAUACGCCGCUACUCAAUU
.........(.(((.((((((((((((...........................................)))))))))).))(((((..((((......))))..)))))))).).... (-25.99 = -25.39 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:32 2006