Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,132,685 – 2,132,878 |
Length | 193 |
Max. P | 0.997927 |
Location | 2,132,685 – 2,132,801 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -22.44 |
Energy contribution | -23.28 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.23 |
Mean z-score | -2.45 |
Structure conservation index | 0.74 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2132685 116 + 27905053 AAAUCCU-UUUUUUCAGAAAGUGCCGUGAUAGUCUGCAUAUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACUAAAACACUGAUAGUUGGUUCCAGUAACCAAUUAUC .....((-(((.....)))))(((.(((((.((((((....((((((......))))))..))))))....))))))))...........(((((((((((.....))))))))))) ( -32.90) >DroSec_CAF1 276041 117 + 1 AAAUCUUAUUUUUUCAGCAAGUGCCGUGGUAGUCUGCCUCUUAGGAAUACAUUUUUCUACGGCGGUCAUCGACCACGCAACAAAACCACUGAUAGUUGGAUCCAGUGACCAAUUAUC ....................((..((((((.(.(((((...((((((......)))))).))))).)....))))))..)).........(((((((((.((....))))))))))) ( -31.00) >DroSim_CAF1 295476 117 + 1 AAAUCAUAUUUUUUCAGCAAGUGCCGUGGUAGUCUGCCUCUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUGACCAAUUAUC ....................((..((((((.(((((((...((((((......)))))).)))))))....))))))..)).........(((((((((((.....))))))))))) ( -34.20) >DroEre_CAF1 280221 117 + 1 AAAUUCUAUUUGUAUAGCAAGUGCAAUAAUAGUCUGCAUAUUUAAAGUACAUUUUUGUACGGCGGAGACUGAUCACGUAUUAAAGCCACAGAUAGUUGGUGCUAAAAGCCAACUAUC .....((((((((((.....)))))..)))))..............(((((....)))))((((....)((((.....))))..)))...((((((((((.......)))))))))) ( -27.90) >DroYak_CAF1 280865 117 + 1 AAAUUCUUUUUGUUUAGCAAGUGCAAUGAUAGUCUUCAUAUUAAGAAUACAUUUUUGUACGGCGGAGGCUGAUCACGUAAUAAAACCACAGAUAGUUGGUGCCAGUAGCCAACUAUC ..........((.(((((..((((((.(((.((.(((.......))).))))).)))))).......))))).))...............((((((((((.......)))))))))) ( -26.50) >consensus AAAUCCUAUUUUUUCAGCAAGUGCCGUGAUAGUCUGCAUAUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUAACCAAUUAUC .....................(((.(((((.((((((....((((((......))))))..))))))....))))))))...........((((((((((.......)))))))))) (-22.44 = -23.28 + 0.84)
Location | 2,132,723 – 2,132,841 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.64 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -21.73 |
Energy contribution | -21.77 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.25 |
Mean z-score | -3.36 |
Structure conservation index | 0.66 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2132723 118 + 27905053 AUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACUAAAACACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUC ....((((((..(((((((...(((((......)).)))..........(((((((((((((.....))))))))))))))))))))..))))))....(((((.....))))).... ( -36.40) >DroSec_CAF1 276080 109 + 1 CUUAGGAAUACAUUUUUCUACGGCGGUCAUCGACCACGCAACAAAACCACUGAUAGUUGGAUCCAGUGACCAAUUAUCAAAGAAAGAA---------UCGGAAUUGCCCAUUCCCAUC ....(((((...(((((((.((..((((...)))).))............((((((((((.((....)))))))))))).))))))).---------..((......))))))).... ( -27.20) >DroSim_CAF1 295515 118 + 1 CUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUGACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUC ....((((((..(((((((...(((((......)).)))..........(((((((((((((.....))))))))))))))))))))..))))))....(((((.....))))).... ( -36.80) >DroEre_CAF1 280260 118 + 1 AUUUAAAGUACAUUUUUGUACGGCGGAGACUGAUCACGUAUUAAAGCCACAGAUAGUUGGUGCUAAAAGCCAACUAUCAGAGAAUGAAAUAUUCCGGUCGGAAUUGCCCAUUCCCAUC .......(((((....)))))((((....)((((.....))))..)))...((((((((((.......)))))))))).(.(((((....(((((....)))))....))))).)... ( -35.30) >DroYak_CAF1 280904 118 + 1 AUUAAGAAUACAUUUUUGUACGGCGGAGGCUGAUCACGUAAUAAAACCACAGAUAGUUGGUGCCAGUAGCCAACUAUCAGAGAAAGAAAUAUUCCGUUCAGAAUUGCCUAUUCCCAUU .....(((((((.(((((...(((((((.((..((..((......))....((((((((((.......)))))))))).))...)).....)))))))))))).))..)))))..... ( -28.10) >consensus AUUAGGAAUACAUUUUUCUACGGCGGACAUCGAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUC ..((((((......)))))).(((((...((((..............(.((((((((((((.......)))))))))))).)...............))))..))))).......... (-21.73 = -21.77 + 0.04)
Location | 2,132,763 – 2,132,878 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.75 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -17.46 |
Energy contribution | -18.46 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.15 |
Mean z-score | -3.91 |
Structure conservation index | 0.67 |
SVM decision value | 2.96 |
SVM RNA-class probability | 0.997927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2132763 115 + 27905053 ACUAAAACACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUCAAACUAAACUAUGGGAAUCAACAAAUUUA---UAAAAAUG .........(((((((((((((.....)))))))))))))...........((((....))))(((...((((((((...........))))))))...))).....---........ ( -28.30) >DroSec_CAF1 276120 109 + 1 ACAAAACCACUGAUAGUUGGAUCCAGUGACCAAUUAUCAAAGAAAGAA---------UCGGAAUUGCCCAUUCCCAUCAAACUAAACUAUGGGAAUCAACAAUUUCCUAUUAAAAAUG ..........((((((((((.((....)))))))))))).........---------..(((((((...((((((((...........))))))))...)))))))............ ( -25.40) >DroSim_CAF1 295555 118 + 1 ACAAAACCACUGAUAGUUGGUUCCAGUGACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUCAAACUAAACUAUAGGAAUCAACAAUUUCCUAUUAAAAAUG .........(((((((((((((.....))))))))))))).(((.(....(((((....)))))....).)))...............(((((((........)))))))........ ( -28.20) >DroEre_CAF1 280300 115 + 1 UUAAAGCCACAGAUAGUUGGUGCUAAAAGCCAACUAUCAGAGAAUGAAAUAUUCCGGUCGGAAUUGCCCAUUCCCAUCAAACUAAACUAUGGUAAUCAGCCAAUUUA---UAAUAAUA .....((((..((((((((((.......)))))))))).(.(((((....(((((....)))))....))))).)..............))))..............---........ ( -28.70) >DroYak_CAF1 280944 115 + 1 AUAAAACCACAGAUAGUUGGUGCCAGUAGCCAACUAUCAGAGAAAGAAAUAUUCCGUUCAGAAUUGCCUAUUCCCAUUAAACUGAACUAUGACAAUCAACAAAUUUA---UAAUAAUA (((((......((((((((((.......)))))))))).................((((((...((........)).....))))))................))))---)....... ( -20.20) >consensus ACAAAACCACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUCAAACUAAACUAUGGGAAUCAACAAAUUUA___UAAAAAUG .........((((((((((((.......))))))))))))...................(((.(((...((((((((...........))))))))...))).)))............ (-17.46 = -18.46 + 1.00)
Location | 2,132,763 – 2,132,878 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.75 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -19.36 |
Energy contribution | -20.40 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.18 |
Mean z-score | -2.36 |
Structure conservation index | 0.66 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2132763 115 - 27905053 CAUUUUUA---UAAAUUUGUUGAUUCCCAUAGUUUAGUUUGAUGGGAAUGGGCAAUUCCGAACGGAAUAUUUCUUUCUCUGAUAAUUGGUUACUGGAACCAACUAUCAGUGUUUUAGU ........---......((((.((((((((...........)))))))).))))(((((....)))))........(.((((((.((((((.....)))))).)))))).)....... ( -31.50) >DroSec_CAF1 276120 109 - 1 CAUUUUUAAUAGGAAAUUGUUGAUUCCCAUAGUUUAGUUUGAUGGGAAUGGGCAAUUCCGA---------UUCUUUCUUUGAUAAUUGGUCACUGGAUCCAACUAUCAGUGGUUUUGU ...........((((.(((((.((((((((...........)))))))).)))))))))..---------.....((.((((((.((((((....)).)))).)))))).))...... ( -29.80) >DroSim_CAF1 295555 118 - 1 CAUUUUUAAUAGGAAAUUGUUGAUUCCUAUAGUUUAGUUUGAUGGGAAUGGGCAAUUCCGAACGGAAUAUUUCUUUCUCUGAUAAUUGGUCACUGGAACCAACUAUCAGUGGUUUUGU ..........(((((((((((.((((((((...........)))))))).))))(((((....))))))))))))((.((((((.((((((....).))))).)))))).))...... ( -31.80) >DroEre_CAF1 280300 115 - 1 UAUUAUUA---UAAAUUGGCUGAUUACCAUAGUUUAGUUUGAUGGGAAUGGGCAAUUCCGACCGGAAUAUUUCAUUCUCUGAUAGUUGGCUUUUAGCACCAACUAUCUGUGGCUUUAA ........---...............(((((............(((((((((..(((((....)))))..))))))))).(((((((((.........))))))))))))))...... ( -30.10) >DroYak_CAF1 280944 115 - 1 UAUUAUUA---UAAAUUUGUUGAUUGUCAUAGUUCAGUUUAAUGGGAAUAGGCAAUUCUGAACGGAAUAUUUCUUUCUCUGAUAGUUGGCUACUGGCACCAACUAUCUGUGGUUUUAU ((..((((---((..(((((((((((((....((((......))))....)))))))...))))))..............(((((((((.........)))))))))))))))..)). ( -23.00) >consensus CAUUUUUA___UAAAUUUGUUGAUUCCCAUAGUUUAGUUUGAUGGGAAUGGGCAAUUCCGAACGGAAUAUUUCUUUCUCUGAUAAUUGGUUACUGGAACCAACUAUCAGUGGUUUUGU ................(((((.((((((((...........)))))))).)))))((((....)))).........(.((((((.((((.........)))).)))))).)....... (-19.36 = -20.40 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:24 2006