Locus 5705

Sequence ID 3R_DroMel_CAF1
Location 14,930,962 – 14,931,082
Length 120
Max. P 0.733619
window9336

overview

Window 6

Location 14,930,962 – 14,931,082
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -25.92
Consensus MFE -25.24
Energy contribution -25.32
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.733619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14930962 120 + 27905053
ACAACUGGAAAUUAUGCAAGUGAUAUAUGGGAGAAAAAACGCCCAGCUUGAGUUUUAAUUAACGCACCAAAAGUAUCUCAUAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
.(..(((...(((((....)))))...)))..).......((((((.(((((.((((......(((....(((((((.....)))))))..))).....)))).))))).)))))).... ( -26.70)
>DroSec_CAF1 60934 120 + 1
ACAACUGGAAAUUAUGCAAGUGAUAUAUGGGAGAAAAAACGCCCAGCUUGAGUUUUAAUUAACGCACCAAAAGUAUCUCACAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
.(..(((...(((((....)))))...)))..).......((((((.(((((.((((......(((....(((((((.....)))))))..))).....)))).))))).)))))).... ( -26.70)
>DroSim_CAF1 59625 120 + 1
ACAACUGGAAAUUAUGCAAGUGAUAUAUGGGAGAAAAAACGCCCAGCUUGAGUUUUAAUUAACGCACCAAAAGUAUCUCACAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
.(..(((...(((((....)))))...)))..).......((((((.(((((.((((......(((....(((((((.....)))))))..))).....)))).))))).)))))).... ( -26.70)
>DroEre_CAF1 57450 120 + 1
ACAACUGGAAAUUAUGCAAGUGAUAUAUGGGAGAAAAAACGCCCAGCUCGAGUUUUAAUUAACGCACCACAAGUAUCUCAAAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
.(..(((...(((((....)))))...)))..).......((((((.(((((.((((......(((....(((((((.....)))))))..))).....)))).))))).)))))).... ( -28.80)
>DroYak_CAF1 64261 120 + 1
ACAACUGGAAAUUAUGCAAUUGAUAUAUGGGAGAAAAAACGCUCAGCUUCAGUUUUAAUUAACGCACCAAAAGUAUCUCUAAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
......(..(((((...((((((....((((.(......).))))...)))))).)))))..)((.(((((((((((.....)))))))..........((.....))..)))))).... ( -20.70)
>consensus
ACAACUGGAAAUUAUGCAAGUGAUAUAUGGGAGAAAAAACGCCCAGCUUGAGUUUUAAUUAACGCACCAAAAGUAUCUCAAAGAUACUUACUGCAUUCAUGAAUCUCGAUUUGGGCUUAG
.(..(((...(((((....)))))...)))..).......((((((.(((((.((((......(((....(((((((.....)))))))..))).....)))).))))).)))))).... (-25.24 = -25.32 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:23 2006