Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,930,382 – 14,930,499 |
Length | 117 |
Max. P | 0.995487 |
Location | 14,930,382 – 14,930,499 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -11.00 |
Energy contribution | -13.18 |
Covariance contribution | 2.18 |
Combinations/Pair | 1.07 |
Mean z-score | -2.88 |
Structure conservation index | 0.40 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14930382 117 + 27905053 UGGGGUUGGGGUCAGGGUCGUCAUAGCAUUUUGAUUACAAUUCAAGCAUGUUUAAAUAUGUAUGCUUAGGCAUUAGCCAAAAUCAGAUACCCUGCUCUCCAAACUACCCAUAUU---AUU ((((.((((((.((((((.(((..(((((.((((.......))))((((((....)))))))))))..(((....))).......)))))))))..))))))....))))....---... ( -39.50) >DroSec_CAF1 60381 93 + 1 UG------GGGUCAGGGUCGUCAUAGCAUUUUGAUUACACUUUAAGCAUGUUCAAAUAUGUAUGCUUA-------------AUCAGAUACCCUGCUCUCUAAAUUACCCA--------UU ((------(((.((((((.((((........))))......(((((((((..........))))))))-------------)......))))))..))))).........--------.. ( -22.20) >DroSim_CAF1 59075 101 + 1 UG------GGGUCAGGGUCGUCAUAGCAUUUUGAUUACACUUAAAGCAUGUUCAAAUAUGUAUGCUUA-------------AUCAGAUACCCUGCUAACCAAACUACCCAUAUUAUUAUU ..------((((((((((.(((..((((((((((......)))))((((((....)))))))))))..-------------....)))))))))...........))))........... ( -21.40) >DroEre_CAF1 56898 107 + 1 UG------GGGUCAGGGCCG---UAGCUUUUUGAUUACAAUUUAAGCUUGUUCAAAUGUGUAUGCUUAAGCAUUAGCCCAAAUCAGAAACGCUACUCC-CAAACUCCCCAUAUU---AUU ((------(((...(((..(---(((((((((((((.....((((((.((..(....)..)).))))))((....))...))))))))).))))).))-).....)))))....---... ( -32.30) >DroYak_CAF1 63682 107 + 1 UG------GGGUCAGGGUCG---UAGCCUUUUGAUUACAAUUUAAGCUUGUUCAAAUAUGUAUGCUUAGGCAUUAGCCCAAAUCAAAAACCCUACUCU-UAAACUCCCUAUAUU---AUU .(------((((..(((..(---(((..((((((((......(((((................)))))(((....)))..))))))))...)))).))-)..))))).......---... ( -22.99) >consensus UG______GGGUCAGGGUCGUCAUAGCAUUUUGAUUACAAUUUAAGCAUGUUCAAAUAUGUAUGCUUA_GCAUUAGCC_AAAUCAGAUACCCUGCUCUCCAAACUACCCAUAUU___AUU ........((((((((((...........(((((((.......(((((((..........))))))).(((....)))..))))))).))))))...........))))........... (-11.00 = -13.18 + 2.18)
Location | 14,930,382 – 14,930,499 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -12.10 |
Energy contribution | -12.80 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.15 |
Mean z-score | -2.03 |
Structure conservation index | 0.46 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14930382 117 - 27905053 AAU---AAUAUGGGUAGUUUGGAGAGCAGGGUAUCUGAUUUUGGCUAAUGCCUAAGCAUACAUAUUUAAACAUGCUUGAAUUGUAAUCAAAAUGCUAUGACGACCCUGACCCCAACCCCA ...---....((((....((((.(..((((((.((.(((((((..((.....(((((((............))))))).....))..)))))).)...))..))))))..))))).)))) ( -29.50) >DroSec_CAF1 60381 93 - 1 AA--------UGGGUAAUUUAGAGAGCAGGGUAUCUGAU-------------UAAGCAUACAUAUUUGAACAUGCUUAAAGUGUAAUCAAAAUGCUAUGACGACCCUGACCC------CA ..--------.((((...........((((((......(-------------(((((((.((....))...))))))))(((((.......)))))......))))))))))------.. ( -20.50) >DroSim_CAF1 59075 101 - 1 AAUAAUAAUAUGGGUAGUUUGGUUAGCAGGGUAUCUGAU-------------UAAGCAUACAUAUUUGAACAUGCUUUAAGUGUAAUCAAAAUGCUAUGACGACCCUGACCC------CA ..........((((..(((.((((..((.(((((.((((-------------(((((((.((....))...))))).......))))))..))))).))..))))..)))))------)) ( -21.61) >DroEre_CAF1 56898 107 - 1 AAU---AAUAUGGGGAGUUUG-GGAGUAGCGUUUCUGAUUUGGGCUAAUGCUUAAGCAUACACAUUUGAACAAGCUUAAAUUGUAAUCAAAAAGCUA---CGGCCCUGACCC------CA ...---......(((.(((.(-((.(((((.(((.((((((((((....))))))...((((.((((((......)))))))))))))).)))))))---)..))).)))))------). ( -33.10) >DroYak_CAF1 63682 107 - 1 AAU---AAUAUAGGGAGUUUA-AGAGUAGGGUUUUUGAUUUGGGCUAAUGCCUAAGCAUACAUAUUUGAACAAGCUUAAAUUGUAAUCAAAAGGCUA---CGACCCUGACCC------CA ...---......(((.(((..-...(((.(.((((((((((((((....))))))...((((.((((((......)))))))))))))))))).)))---)......)))))------). ( -27.70) >consensus AAU___AAUAUGGGUAGUUUGGAGAGCAGGGUAUCUGAUUU_GGCUAAUGC_UAAGCAUACAUAUUUGAACAUGCUUAAAUUGUAAUCAAAAUGCUAUGACGACCCUGACCC______CA ...........(((............((((((..........(((....)))..(((((.....(((((((((.......))))..))))))))))......)))))).)))........ (-12.10 = -12.80 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:22 2006