| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,929,278 – 14,929,398 |
| Length | 120 |
| Max. P | 0.796148 |
| Location | 14,929,278 – 14,929,398 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.73 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -27.06 |
| Energy contribution | -27.58 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14929278 120 + 27905053 GUUGUUUAUAGCCAACCAUCGAUCGAAGUUGAAUUCGAAGUCAGACCAGUUCCGGCUCCACAAAUCAGUUAGCUUGACUAUCUAUCUGGUGGACUGUACUGCAUGGUAAUGGCUAAUAAU ........(((((((((((...(((((......)))))........((((..(((.(((((.....((.(((.....))).)).....)))))))).)))).)))))..))))))..... ( -31.80) >DroSec_CAF1 59264 114 + 1 GUUGUUUAUAGCCGACCAGCGAUCGAAGUUGAAUUCGAAGUCGGACCAGUUCCGGCUCCACAAAUCAGUUAGCUUGACUGU------ACUGGACUGUACUGCAUGGUAAUGGCUAAUAAU ........(((((.(((((((.(((((......))))).((((((.....))))))((((.....(((((.....))))).------..))))......))).))))...)))))..... ( -34.20) >DroSim_CAF1 57957 120 + 1 GUUGUUUAUAGCCAACCAGCGAUCGAAGUUGAAUUCGAAGUCGGACCAGUUCCGGCUCCACAAAUCAGUUAGCUGGACUAUCUAUCUGGUGGACUGUACUGCAUGGUAAUGGCUAAUAAU ........(((((((((((((.(((((......)))))((((.(.((((.(((((((..((......)).)))))))........))))).))))....))).))))..))))))..... ( -38.20) >DroEre_CAF1 55819 117 + 1 GUUGUUUAUAGCCAAC---CGAUCGAAGUUGAAUUCGAAGUCGGACCAGUUCCGGCUCCACAAAUCAGUUAGCUUGACCAUCUAUCUGGUGGACUGUACUGCAUGGUAAUGGCUAAUAAU ........((((((((---((.(((((......)))))(((((((.....)))))))........(((((((.((.((((......)))).))))).))))..))))..))))))..... ( -34.70) >DroYak_CAF1 62624 114 + 1 G---UUUACAGCCAAC---CGAUCGAAGUUGAAUUCGAAGUCGGACCAGUUCCGGCUCCACAAAUCAGUUAGCCUGACUAUUUAUCUGGUGGACUGUACUGCUUGGUAAUGGCUAAUAAU .---.....(((((((---((((((((......)))))(((((((.....)))))))...((...(((((.(((.((.......)).))).)))))...)).)))))..)))))...... ( -33.10) >consensus GUUGUUUAUAGCCAACCA_CGAUCGAAGUUGAAUUCGAAGUCGGACCAGUUCCGGCUCCACAAAUCAGUUAGCUUGACUAUCUAUCUGGUGGACUGUACUGCAUGGUAAUGGCUAAUAAU ........((((((........(((((......)))))(((((((.....)))))))(((((...(((((.(((.((.......)).))).)))))...))..)))...))))))..... (-27.06 = -27.58 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:13 2006