Locus 5700

Sequence ID 3R_DroMel_CAF1
Location 14,929,018 – 14,929,135
Length 117
Max. P 0.535515
window9325

overview

Window 5

Location 14,929,018 – 14,929,135
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.81
Mean single sequence MFE -32.96
Consensus MFE -24.84
Energy contribution -25.68
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.75
SVM decision value 0.00
SVM RNA-class probability 0.535515
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14929018 117 + 27905053
UCUGCUAAUUGGCCAAAAACAGGUGCCUGGGGGCGAUAUCAGUUCACUUAGAUUGGCUAACCAUUAAGA---UUCUUGCUUCAUCGCCCCACCUGGCGGCGCCACUCGGUACUAAUUGAA
.....(((((((.........(.((((..((((((((...(((...(((((..(((....)))))))).---.....)))..))))))))....)))).)(((....))).))))))).. ( -33.90)
>DroSec_CAF1 59013 114 + 1
-CUACUAAUUGGCCAAAAACAGCUGCCUGG--GCGAUAUCAGUUCACUUAGAUUGGCUAACCAUUGAGA---UUCUUGCUUCAUCGCCCCACCUGGCGGCGCCACUCGGUACUAAUUGAA
-....(((((((.........((((((.((--(((((...(((...(((((..(((....)))))))).---.....)))..))))))).....))))))(((....))).))))))).. ( -33.10)
>DroSim_CAF1 57709 111 + 1
-C---UAAUUGGCCAAAAGCAGCUGCCUGG--GCGAUAUCAGUUCACUUAGAUUGGCAAACCAUUAAGA---UUCUUGCUUCAUAGCCCCACCUGGCGGCGCCACUCGGUACUAAUUGAA
-.---(((((((.........((((((.((--((((.......)).(((((..(((....)))))))).---.............)))).....))))))(((....))).))))))).. ( -28.60)
>DroEre_CAF1 55553 114 + 1
-C---UAAUUGACCGAAAACAGCUGCCUGG--GCGAUAUCAGUUCGCUUAGAUUGGCUAACCAUUAAGACCAUUCUUGCUUCAUCGCCCCACCUGGCGGCGCCACUCGGUACUAAUUGAA
-.---(((((((((((.....((((((.((--(((((...(((......(((.(((((........)).))).))).)))..))))))).....)))))).....)))))..)))))).. ( -37.40)
>DroYak_CAF1 62363 111 + 1
-C---UAAUUGACCAAAAACAGCUGCCUGG--GCGAUAUCAGUUCGCUUAGAUUGGCUAACCAUUAAGA---UUCUUGCUUCAUCGCCCCACCUGGCGGCGCCACUCGGUACUAAUCGAA
-.---...((((.........((((((.((--(((((...(((...(((((..(((....)))))))).---.....)))..))))))).....))))))(((....))).....)))). ( -31.80)
>consensus
_C___UAAUUGGCCAAAAACAGCUGCCUGG__GCGAUAUCAGUUCACUUAGAUUGGCUAACCAUUAAGA___UUCUUGCUUCAUCGCCCCACCUGGCGGCGCCACUCGGUACUAAUUGAA
.....(((((((.........((((((.((..(((((.((((((......))))))........(((((....)))))....)))))....)).))))))(((....))).))))))).. (-24.84 = -25.68 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:12 2006