Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,131,340 – 2,131,451 |
Length | 111 |
Max. P | 0.567644 |
Location | 2,131,340 – 2,131,451 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -18.50 |
Energy contribution | -19.65 |
Covariance contribution | 1.15 |
Combinations/Pair | 1.35 |
Mean z-score | -1.21 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2131340 111 + 27905053 AAAUUUUAACU---UUCGACA-AUAUACAGAAGUUGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUAGCCAAACUGGAAAACCUUCUGAGAACGCG ...........---.......-.....(((((((((....)))))...(((((....(((((....)))))..(((((((...))))))).))))).......))))........ ( -29.20) >DroSec_CAF1 274635 114 + 1 AAUUGUUAAUUCUAUUCUAUU-UUAUAUAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUAAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG .....................-.....((((((((((.....))))..(((((.....((((....))))...(((((((...))))))).))))).....))))))........ ( -26.20) >DroSim_CAF1 294108 114 + 1 AAAUGUUAAUUAUAUUCUAUU-UUAUAUAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG ....(((...((((.......-.))))((((((((((.....))))..(((((....(((((....)))))..(((((((...))))))).))))).....))))))..)))... ( -28.70) >DroEre_CAF1 278126 111 + 1 AAAUAUCAAUU----UCUAUUUAUAAACAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACCCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAGAACGCG ...........----............((((((((((.....))))..(((((....(((((....)))))..(((((((...))))))).))))).....))))))........ ( -30.60) >DroWil_CAF1 285139 113 + 1 AAUUGGGAAAUUUUUGUAAAU-C-CUACAGAAGUGGCUCGAAGCUAUCCCAGUGAUCCCAAUACACGCCUAAAUGGUUAUAUACUCGCCAAAAUGGAGAAUCUUUUAAAGACACG ...(((((.(((((((((...-.-.)))))))))(((.....))).)))))(((.((.........(((.....))).......((.((.....)).))..........))))). ( -23.30) >DroAna_CAF1 247493 112 + 1 AAAUUUGAUAUUUAUUUUAUU-U--UAUAGAAGUAGCUCGAAGCUAUCCUAGUGAUCCCAGCACUCGAUUGAACGGCUAUAUUGUGGCCAAGUUGGAGAAUAUCCUGAAGACGCG ......(((((((........-.--..(((..(((((.....))))).)))......(((((..((....))..((((((...))))))..))))).)))))))........... ( -22.50) >consensus AAAUGUUAAUU_UAUUCUAUU_UUAUACAGAAGUGGCUCGCAGCUAUCCCAGUGACCCGAGCACUCGCUUGAAUGGCUAUAUAGUGGCCAAACUGGAAAACCUUCUGAAAACGCG ...........................((((((((((.....))))..(((((....(((((....)))))..((((((.....)))))).))))).....))))))........ (-18.50 = -19.65 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:20 2006