Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 330,492 – 330,591 |
Length | 99 |
Max. P | 0.990863 |
Location | 330,492 – 330,591 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 72.30 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -14.65 |
Energy contribution | -16.80 |
Covariance contribution | 2.15 |
Combinations/Pair | 1.44 |
Mean z-score | -2.63 |
Structure conservation index | 0.40 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 330492 99 + 27905053 UUACCCAGUAUAGCCAUGAAGCCGCAAUGCUUUCUGGCUUCUCUGGGGCAAGGGCAUUUGUCCACACUGGCACAGGCAACUCUGGCAUUGAAAUCUUGC ...(((((...(((((.(((((......))))).)))))...)))))((((((((....)))).((.((.((.((....)).)).)).)).....)))) ( -39.20) >DroGri_CAF1 18022 98 + 1 -GGCACACCUGAUUCAUAAGGGCGCAAUCGUGGCGAGCAGCCGCUGGGCAUGGACACUUGUCAAUGCCCGCACUUGCAAUUAGUGCAUCGAAUUGCUGC -.(((..(((........)))..(((((((((((.....))))).((((((.(((....))).))))))(((((.......)))))...).)))))))) ( -38.60) >DroSec_CAF1 12967 99 + 1 UUACCCAGACUAGCCAUGAAGCCGCAAUGCUUUCUGGCUUCUCUUGGGCAAGGACAUUUGUCCACACUGGCACCGGCAACUCUGGCAUUGAAAUCUUGC ...((.(((..(((((.(((((......))))).)))))..))).))((((((((....)))).((.((.((..(....)..)).)).)).....)))) ( -33.20) >DroSim_CAF1 7986 99 + 1 UUACCCAGACUAGCCAUGAAGCCGCAAUGCUUUCUGGCUUCUCUUGGGCAAGGACAUUUGUCCACACUGGCACCGGCAACUCUGGCAUUGAAAUCUUGC ...((.(((..(((((.(((((......))))).)))))..))).))((((((((....)))).((.((.((..(....)..)).)).)).....)))) ( -33.20) >DroEre_CAF1 10808 99 + 1 GUACCCAGUUCAGCCAUGAAGCUGCAGUGCUUCCUGGCUUCUCUGGGGCAAGGACAUUUGUCCACACUGGCACCGAGAACUCGGGCAUUGAAAUCCUGC ...(((((...(((((.(((((......))))).)))))...)))))(((.((((....)))).((...((.((((....))))))..))......))) ( -41.50) >DroPer_CAF1 8228 96 + 1 ---CCCUUCUGAGCCAUAAAGUGGCAAUUUCGGCGAGCCGCCUCCGGACACGGACACUUGUCCAGGCUGGCAUUGUCUAGCCGAGCCUUGAACUGCUGC ---....((((.(((((...)))))......((((...))))..))))...((((....))))((((((((........))).)))))........... ( -31.50) >consensus UUACCCAGAUUAGCCAUGAAGCCGCAAUGCUUUCUGGCUUCUCUUGGGCAAGGACAUUUGUCCACACUGGCACCGGCAACUCGGGCAUUGAAAUCCUGC ...((.((...(((((.(((((......))))).)))))...)).))(((.((((....))))......((.((((....))))))..........))) (-14.65 = -16.80 + 2.15)
Location | 330,492 – 330,591 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 72.30 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -15.86 |
Energy contribution | -17.62 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.41 |
Mean z-score | -1.68 |
Structure conservation index | 0.45 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 330492 99 - 27905053 GCAAGAUUUCAAUGCCAGAGUUGCCUGUGCCAGUGUGGACAAAUGCCCUUGCCCCAGAGAAGCCAGAAAGCAUUGCGGCUUCAUGGCUAUACUGGGUAA (((((.........(((.(.(.((....)).).).))).........)))))(((((...(((((..((((......))))..)))))...)))))... ( -32.17) >DroGri_CAF1 18022 98 - 1 GCAGCAAUUCGAUGCACUAAUUGCAAGUGCGGGCAUUGACAAGUGUCCAUGCCCAGCGGCUGCUCGCCACGAUUGCGCCCUUAUGAAUCAGGUGUGCC- (((((........(((((.......)))))((((((.(((....))).))))))....)))))...........(((((((........))).)))).- ( -37.80) >DroSec_CAF1 12967 99 - 1 GCAAGAUUUCAAUGCCAGAGUUGCCGGUGCCAGUGUGGACAAAUGUCCUUGCCCAAGAGAAGCCAGAAAGCAUUGCGGCUUCAUGGCUAGUCUGGGUAA ..............(((((.(.(((((.((......((((....))))..))))....((((((............))))))..))).).))))).... ( -32.00) >DroSim_CAF1 7986 99 - 1 GCAAGAUUUCAAUGCCAGAGUUGCCGGUGCCAGUGUGGACAAAUGUCCUUGCCCAAGAGAAGCCAGAAAGCAUUGCGGCUUCAUGGCUAGUCUGGGUAA ..............(((((.(.(((((.((......((((....))))..))))....((((((............))))))..))).).))))).... ( -32.00) >DroEre_CAF1 10808 99 - 1 GCAGGAUUUCAAUGCCCGAGUUCUCGGUGCCAGUGUGGACAAAUGUCCUUGCCCCAGAGAAGCCAGGAAGCACUGCAGCUUCAUGGCUGAACUGGGUAC ((((.....((..((((((....)))).))...)).((((....))))))))(((((...(((((.(((((......))))).)))))...)))))... ( -40.30) >DroPer_CAF1 8228 96 - 1 GCAGCAGUUCAAGGCUCGGCUAGACAAUGCCAGCCUGGACAAGUGUCCGUGUCCGGAGGCGGCUCGCCGAAAUUGCCACUUUAUGGCUCAGAAGGG--- (.(((.(((((.((((.(((........))))))))))))..((.((((....)))).)).)))).((......((((.....))))......)).--- ( -35.90) >consensus GCAAGAUUUCAAUGCCAGAGUUGCCGGUGCCAGUGUGGACAAAUGUCCUUGCCCAAGAGAAGCCAGAAAGCAUUGCGGCUUCAUGGCUAAACUGGGUAA (((......((((......))))....)))......((((....)))).(((((.((...(((((..((((......))))..)))))...))))))). (-15.86 = -17.62 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:38 2006