Locus 5698

Sequence ID 3R_DroMel_CAF1
Location 14,928,131 – 14,928,251
Length 120
Max. P 0.912220
window9322

overview

Window 2

Location 14,928,131 – 14,928,251
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.83
Mean single sequence MFE -26.64
Consensus MFE -24.82
Energy contribution -24.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.93
SVM decision value 1.08
SVM RNA-class probability 0.912220
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14928131 120 + 27905053
UCACUCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCGGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGAGCAACAAAAGCGCCUAUU
............((((((.((((((((((..(((..(((.((....)).)))..)))........))))))))))...((((.....)))).))))))(((...........)))..... ( -24.80)
>DroSec_CAF1 58132 120 + 1
UCACGCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCGGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGCGCAACAAAAGCGCCUAUU
....((((.((.(((((........))))).....)).))))..(((((((((((((((.......))))))).))..))))))....(....)...((.((((.......))))))... ( -29.80)
>DroSim_CAF1 56825 120 + 1
UCACUCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCGGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGCGCAACAAAAGCGCCUAUU
........(...((((((.((((((((((..(((..(((.((....)).)))..)))........))))))))))...((((.....)))).)))))).)((((.......))))..... ( -29.30)
>DroEre_CAF1 54674 120 + 1
UCACUCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCGGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGAGCAACAAAAGCGCCUAUU
............((((((.((((((((((..(((..(((.((....)).)))..)))........))))))))))...((((.....)))).))))))(((...........)))..... ( -24.80)
>DroYak_CAF1 61495 120 + 1
UCACUCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCAGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGAGCAACAAAAGCGCCUAUU
.....(((.((.(((((........))))).....)).)))....(((.((.(((((((.......))))))).......((((...((.........))...))))....))))).... ( -24.50)
>consensus
UCACUCCAGACAUUUUCUAAUAAUUGAAAAGCAAAGUGUGGCCACGGCGGCAAAUUGAAUUAUAAUUUCAAUUAUGAACCGUUGAAAGCGGAAGAAAAGCGAGCAACAAAAGCGCCUAUU
............((((((.((((((((((..(((..(((.((....)).)))..)))........))))))))))...((((.....)))).))))))(((...........)))..... (-24.82 = -24.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:09 2006