Locus 5694

Sequence ID 3R_DroMel_CAF1
Location 14,926,524 – 14,926,628
Length 104
Max. P 0.557773
window9305

overview

Window 5

Location 14,926,524 – 14,926,628
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 83.91
Mean single sequence MFE -18.15
Consensus MFE -13.95
Energy contribution -14.15
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.77
SVM decision value 0.05
SVM RNA-class probability 0.557773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14926524 104 - 27905053
AACAACAAGCCGAUGAUUUACUGACGAAAAAGCACGCAAAAAAUAUCAUCAUUGGCUUGAGUUAUUUAUUUAUUUAGCAAAAACGAUUUCGUGCCUUAAAAAAG
.....((((((((((((....((.((........)))).........)))))))))))).((((..........))))....(((....)))............ ( -18.22)
>DroSec_CAF1 56545 104 - 1
AACAACAAGCCGAUGAUUUACUGACGAAAAAGCACGCAAAAAAUAUCAUCAUUGGCUUGAGUUAUUUAUUUAUUUAGCAAAAACGAUUUCGUGCCUAAAAAAAG
.....((((((((((((....((.((........)))).........)))))))))))).........(((.(((((.....(((....)))..))))).))). ( -19.42)
>DroSim_CAF1 55176 103 - 1
AACAACAAGCCGAUGAUUUACUGACGAAAAAGCACGCAAAAAAUAUCAUCAUUGGCUUGAGUUAUUUAUUUAUUUAGCAAAAACGAUUUCGUGCCUAAA-AAAG
.....((((((((((((....((.((........)))).........)))))))))))).............(((((.....(((....)))..)))))-.... ( -19.32)
>DroEre_CAF1 53084 98 - 1
AACAACAAGCCGAUGAUUUACUGACAAAAAAGGA-----GAAAAAUUAUCAUUGGCUUGAGUUAUUUAUUUAUUUCGCAAAAGAGAUUUCGCGGCUAAA-AAAG
.....((((((((((((.................-----........))))))))))))...............((((.(((....))).)))).....-.... ( -19.81)
>DroYak_CAF1 59924 83 - 1
UACUACAAGCCGAUGAUUUACUGACGAAUAAGGA------AAAAAUUAUCAUUGCCUUGAGUUAUUUAUUUAUUU--------------UGCGGCUAAA-AAAG
.......((((((((((((.((........))..------..))))))))...((..(((((.....)))))...--------------.))))))...-.... ( -14.00)
>consensus
AACAACAAGCCGAUGAUUUACUGACGAAAAAGCACGCAAAAAAUAUCAUCAUUGGCUUGAGUUAUUUAUUUAUUUAGCAAAAACGAUUUCGUGCCUAAA_AAAG
.....((((((((((((..............................))))))))))))............................................. (-13.95 = -14.15 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:53 2006