Locus 5692

Sequence ID 3R_DroMel_CAF1
Location 14,924,896 – 14,925,006
Length 110
Max. P 0.500000
window9302

overview

Window 2

Location 14,924,896 – 14,925,006
Length 110
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 87.09
Mean single sequence MFE -32.05
Consensus MFE -20.12
Energy contribution -20.38
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14924896 110 - 27905053
CAUUCAUGGCAAUUGGCUAUGAGUUACGACUCGAAUGCAGUUGGCAAACAACAUCCAUAAGAGGGGGGCAAAGGGGCAGAAAGGACGUUA---CCAUGCGAUGGCCAUUAAGA
.(((((((((.....)))))))))..(..(((..(((..((((.....))))...)))..)))..)(((...(..(((....((......---)).)))..).)))....... ( -27.20)
>DroSec_CAF1 54978 112 - 1
CAUUCAUGGCAAUUGGCUAUGAGUUACGACUCGAAUGCAGUUGGCAAACAACAUACACAAGAAG-UGGCAAAGGGGCAGAAAGGACGAUAUGGCCACGAGAUGGCCAUAAAGA
.(((((((((.....))))))))).....(((...(((.((((.....))))...(((.....)-)))))..))).............((((((((.....)))))))).... ( -33.50)
>DroEre_CAF1 51419 109 - 1
CAUUCAUGGCAAUUGGUUAUGAGUUACGUCUCGAAUGCAGUUGGCAAGCAACAUCCACAAGAAG-UGGCAAAGGGGCGAAAAGGACGGUC---CCAUGUGCUGGCCAUUGAGA
.(((((((((.....)))))))))....((((((.......((((.((((.(((((((.....)-)))....(((((..........)))---))))))))).)))))))))) ( -34.81)
>DroYak_CAF1 58239 109 - 1
CAUUCAUGGCAAUUGGCUAUGAGUUACGUCUCGAAUUCAGUUGGCAAACAACAUCCAUAAGAAG-UGGAAAAGGGGAGAAAAGGACGGUC---CCAUGUGCCGGCCAUUGAAA
..((((((((....(((((((.(...(((((....(((.((((.....)))).(((((.....)-)))).....))).....)))))..)---.)))).))).)))).)))). ( -32.70)
>consensus
CAUUCAUGGCAAUUGGCUAUGAGUUACGACUCGAAUGCAGUUGGCAAACAACAUCCACAAGAAG_UGGCAAAGGGGCAAAAAGGACGGUA___CCAUGUGAUGGCCAUUAAGA
.(((((((((.....)))))))))...(((((...(((.((((.....))))...((........)))))..))))).....((.((((..........)))).))....... (-20.12 = -20.38 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:50 2006