| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,923,850 – 14,923,968 |
| Length | 118 |
| Max. P | 0.832959 |
| Location | 14,923,850 – 14,923,968 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.24 |
| Mean single sequence MFE | -34.81 |
| Consensus MFE | -15.79 |
| Energy contribution | -15.48 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14923850 118 - 27905053 GAAGGCAUGCCCCAAAACAGAAGGACCCCAAAGAAAAAAGGAAUGUAGGAGCUCUGUAAUCGCGCAGUUCAAGGGCAUUCAUUCCCUAUU-UGGGGCUAUGUUAUG-GCGACCCAUCGAA ((.((..((((....((((...((.(((((((........((((((..(((((.(((....))).)))))....))))))........))-))))))).))))..)-)))..)).))... ( -36.39) >DroSec_CAF1 51146 120 - 1 GAAGGCAUGCCCCAAAACAGAAGGACCCCAAAGAAAGAAAGAAUGUAGGGGCUCUGUAAUCGCGCAGCUCAAGGGCAUUCAUACCCUAUUUUGGGGCUAUGUUAUGGGCGACCCAUCGAA ((.((..(((((...((((...((.((((((((.......((((((..(((((.(((....))).)))))....))))))........)))))))))).))))..)))))..)).))... ( -39.86) >DroEre_CAF1 50402 95 - 1 GAAUGCAUGCCCCAAAACAGAAGGACCCCAAAGAAACGA----CGGAGG-------------GGCA-UUCAAGGGCAUU----CCCUACU-UGGGG-UAUGUUGUG-GAGGCCCUCCGAA ....(((((((((((....(((.(.((((...(......----)...))-------------))).-))).((((....----))))..)-)))))-)))))..((-(((...))))).. ( -34.20) >DroYak_CAF1 57187 89 - 1 GAAUGCAUGUCCCAUAACAGAAGGUCCCCAAAGAGACG------------------------CGCAUUUCAAUGGCAUU----CCUUAUU-UGGGA-CAUGUUGGG-GAGGCCCUCCGAU ....((((((((((......((((...(((..((((..------------------------....))))..)))....----))))...-)))))-)))))((((-(.....))))).. ( -28.80) >consensus GAAGGCAUGCCCCAAAACAGAAGGACCCCAAAGAAACAA____UGUAGG_____________CGCAGUUCAAGGGCAUU____CCCUAUU_UGGGG_UAUGUUAUG_GAGACCCACCGAA ....((((((((((........((...))..........................................((((........))))....))))).))))).................. (-15.79 = -15.48 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:49 2006