Locus 5690

Sequence ID 3R_DroMel_CAF1
Location 14,923,614 – 14,923,704
Length 90
Max. P 0.999969
window9300

overview

Window 0

Location 14,923,614 – 14,923,704
Length 90
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 68.88
Mean single sequence MFE -17.40
Consensus MFE -13.09
Energy contribution -12.77
Covariance contribution -0.32
Combinations/Pair 1.28
Mean z-score -2.17
Structure conservation index 0.75
SVM decision value 5.03
SVM RNA-class probability 0.999969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14923614 90 - 27905053
---CAACAUUCUAAAACAGGUUUUGGGAUUAAACGU-UUAAAAUCUGAAGUUUAGCCG----CCAGAUAAUUUCCAAAAUAGGAAAUUAUUAAUUAUG
---.......(((((.(((((((((((........)-))))))))))...)))))...----...((((((((((......))))))))))....... ( -19.70)
>DroSec_CAF1 50933 78 - 1
---CAAAAUUCUAAAACAGGUUUUGGGACUUAACGU-UUAAAAUCUGAA----------------GAUAAAUUCCGAAAUCGGAAAUUAUUAAUUAUG
---.............((((((((((.((.....))-))))))))))..----------------(((((.(((((....))))).)))))....... ( -17.30)
>DroEre_CAF1 50145 98 - 1
CUCCAAUAUCUUGAAACAGGUUUCGGGAUUACACAUUUUAAAAUAUUAAAUGUAACUCAAUUCAAAACUAUUUUCGUAGUAGGAAAUUAUUGAUUAUG
.......(((((((((....)))))))))...((((((.........))))))...(((((......(((((.....)))))......)))))..... ( -15.20)
>consensus
___CAAAAUUCUAAAACAGGUUUUGGGAUUAAACGU_UUAAAAUCUGAA_U_UA_C______C_AGAUAAUUUCCGAAAUAGGAAAUUAUUAAUUAUG
........((((((((....)))))))).....................................((((((((((......))))))))))....... (-13.09 = -12.77 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:48 2006