Locus 5689

Sequence ID 3R_DroMel_CAF1
Location 14,917,904 – 14,918,015
Length 111
Max. P 0.520131
window9299

overview

Window 9

Location 14,917,904 – 14,918,015
Length 111
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 82.89
Mean single sequence MFE -36.08
Consensus MFE -22.99
Energy contribution -25.28
Covariance contribution 2.29
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.520131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14917904 111 - 27905053
UGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCGACUGGCUGCCAAUUAGUCGAAAUGUCUAAAUGGCGCAGUGAUCGUUGGACAUUCAGAAA----UAGU
.(((((...(((..(((.(((((....)))))..)))..))).((((....))))((((.((((.(.....).)))).)))))))))....................----.... ( -40.90)
>DroSec_CAF1 45046 111 - 1
UGCUUCGGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAAA----UAGU
...(((.(((((..(((.(((((....)))))..)))..)))..((((((..(((((..(((......)))(((.....))))))))....))))).)..)).))).----.... ( -37.10)
>DroSim_CAF1 44968 111 - 1
UGCUUCGGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAAA----UAGU
...(((.(((((..(((.(((((....)))))..)))..)))..((((((..(((((..(((......)))(((.....))))))))....))))).)..)).))).----.... ( -37.10)
>DroEre_CAF1 44373 111 - 1
UGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGACAGCCAAAUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGAAAUUCAGAAA----UAGU
((((((...((((((((.(((((....)))))..)))...(.(((((....))))).).....)))))...(((.....)))))))))...................----.... ( -43.20)
>DroYak_CAF1 51386 115 - 1
UGCUGCAGAUCGAUGGUCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAAAUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUAGACAUUCAGAAAUACAUAGU
((((((...(((((((..(((((....)))))..))....(..((((....))))..).....)))))...(((.....)))))))))........................... ( -39.70)
>DroAna_CAF1 41866 99 - 1
UGUUACAGUGU----AGUAUCACGUGA---CCCAGCCCCCAAAACC-------CUGCCAACAAGUC--AAUGCCUAAAUGGCGCUGUAAUUCUAAUGCUUUUAGAAAGAAAUAUU
.(((((.(((.----.....)))))))---).((((..........-------((.......))..--...(((.....)))))))...((((((.....))))))......... ( -18.50)
>consensus
UGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAAA____UAGU
(((......(((..(((.(((((....)))))..)))..))).((((....))))((((.((((.(.....).)))).))))))).............................. (-22.99 = -25.28 +   2.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:47 2006