Locus 5688

Sequence ID 3R_DroMel_CAF1
Location 14,916,093 – 14,916,208
Length 115
Max. P 0.877983
window9298

overview

Window 8

Location 14,916,093 – 14,916,208
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 94.04
Mean single sequence MFE -30.82
Consensus MFE -25.26
Energy contribution -25.66
Covariance contribution 0.40
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.82
SVM decision value 0.90
SVM RNA-class probability 0.877983
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14916093 115 - 27905053
AUGGGAAAAUAAAUGUAUGCAAGAGUCGAAAUAAAAGCGACCGCUUAAGUGUUUUUCUCGACUCGAUAGAUUUGCUCACCCAAAUCGGUAACGAAAAUCGUUGCUUGGGGCCUUG
..(((....(((((.(((....(((((((((((.((((....))))...))))....))))))).))).)))))....((((....(((((((.....))))))))))).))).. ( -31.90)
>DroSec_CAF1 43268 114 - 1
AUGGGAAAAUAAAUGUAUGCAAGAGUCGAA-UAAAAGCGACCGCUUAAGUGUUUUUCUCGACUCGAUAGAUUUGCUCACCCAAAUCGGUAACGAAAAUCGUUGCUUGGGGCCUUG
..(((....(((((.(((....(((((((.-.((((((.((.......)))))))).))))))).))).)))))....((((....(((((((.....))))))))))).))).. ( -31.10)
>DroSim_CAF1 43153 114 - 1
AUGGGAAAAUAAAUGUAUGCAAGAGUCGAA-AAAAAGCGACCGCUUAAGUGUUUUUCUCGACUCGAUAAAUUUGCUCACCCAAAUUGGUAACGAAAAUCGUUGCUUGGGGCCUUG
.((((.((((...((....)).(((((((.-.((((((.((.......)))))))).))))))).....)))).))))((((....(((((((.....)))))))))))...... ( -29.90)
>DroEre_CAF1 42626 110 - 1
AUGAGAAA----AUGUAUGCAAGAGUCGAA-UAAAAGCGACCGCUUAAGUGUUUUUCUCGUCUCGAUAGAUUUGCUCACCCAAAUCGGUAACGAAAAUCGUUGCUUGGGGCCUUG
..((((((----(...((..(((.((((..-......))))..)))..))..)))))))(((((((..((((((......)))))).((((((.....))))))))))))).... ( -30.40)
>DroYak_CAF1 49609 110 - 1
AUGAGAAA----AUGUAUGCAAGAGUCGAA-UAAAAGCAACCGCUUAAGUGUUUUUCUGAUCUUGAUAGAUUUGCUCACCCAAAUCGGUAACGAAAAUCGUUGCUUGGGGCCUUG
.((((.((----((.(((.(((((...(((-((.((((....))))...)))))......)))))))).)))).))))((((....(((((((.....)))))))))))...... ( -30.80)
>consensus
AUGGGAAAAUAAAUGUAUGCAAGAGUCGAA_UAAAAGCGACCGCUUAAGUGUUUUUCUCGACUCGAUAGAUUUGCUCACCCAAAUCGGUAACGAAAAUCGUUGCUUGGGGCCUUG
.((((........((....)).(((((((...((((((.((.......)))))))).)))))))..........))))((((....(((((((.....)))))))))))...... (-25.26 = -25.66 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:46 2006