Locus 5686

Sequence ID 3R_DroMel_CAF1
Location 14,912,049 – 14,912,150
Length 101
Max. P 0.944118
window9295

overview

Window 5

Location 14,912,049 – 14,912,150
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 81.19
Mean single sequence MFE -20.50
Consensus MFE -10.91
Energy contribution -11.87
Covariance contribution 0.96
Combinations/Pair 1.12
Mean z-score -2.66
Structure conservation index 0.53
SVM decision value 1.34
SVM RNA-class probability 0.944118
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14912049 101 + 27905053
CAUGUCCCCCCCCAUCGAUCUAUGCAGCUAACUAACCCAUCAUCUAGAUGGCCGUGUACAUUGUACCAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
................(((.(((((((.((((....(((((.....)))))..(((.((((((((....)).))))))))).)))).)))))))))).... ( -26.10)
>DroSec_CAF1 39280 85 + 1
C------------AUCGAUCUGUGCAGCUAACUAUCCCAUCAUCUAGAUGGCCGUGUACUUU----CAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
.------------...(((.(((((((.((((....(((((.....)))))..(.((((...----..))))).........)))).)))))))))).... ( -21.00)
>DroSim_CAF1 39201 85 + 1
C------------AUCGAUCUGUGCAGCUAACUAUCCCAUCAUCUAGAUGGCCGUGUACUUU----CAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
.------------...(((.(((((((.((((....(((((.....)))))..(.((((...----..))))).........)))).)))))))))).... ( -21.00)
>DroEre_CAF1 38696 84 + 1
CAUUUC-----CCAUCGAUUGGUGGAACUAUC--------CAUCUGGAUGGCCGUGUACUUU----CAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
......-----.........(((((..(((((--------(....))))))..(((((.((.----((((((....)).))))..)).)))))..))))). ( -19.70)
>DroYak_CAF1 45653 84 + 1
CAUUUC-----CCAUCGAUUUGUGCACCUAUC--------CAUCUAGAUAGCCAUGUACUUU----CAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
......-----.....((((.(((((.(((((--------......)))))....((((...----..))))((((......))))..))))))))).... ( -14.70)
>consensus
CAU_UC_____CCAUCGAUCUGUGCAGCUAACUA_CCCAUCAUCUAGAUGGCCGUGUACUUU____CAGUACCAAUGUCACUGUUGAUUGCAUAAUCACCU
................(((.(((((((.((((.............((.((((...(((((.......)))))....)))))))))).)))))))))).... (-10.91 = -11.87 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:43 2006