Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,911,242 – 14,911,336 |
Length | 94 |
Max. P | 0.977412 |
Location | 14,911,242 – 14,911,336 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.75 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -14.76 |
Energy contribution | -15.80 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.60 |
Structure conservation index | 0.64 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14911242 94 - 27905053 GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAG------------CAGUAGAAAAAACUUCACCCCUUCCCUUCAUAUCGAUAAAAA ((.....(((((....)))))...(((((.(((((.....)))))))))).)------------)....(((.....))).......................... ( -21.60) >DroSec_CAF1 38465 91 - 1 GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAGC---------GGCAGCAGCAAAAACUUCACC------CUUCCUAUCGAUAAAAA ((......((((....))))(((.(((((((((((.....))))))..)))))---------))).))...............------................. ( -26.80) >DroSim_CAF1 38393 82 - 1 GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAG------------------CGGCAAAAACUUCACC------CUUCCUAUCGAUAAAAA (((((..........)))))(((.(((((.(((((.....)))))))))------------------))))............------................. ( -23.60) >DroEre_CAF1 37876 95 - 1 GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGC------AGAAGCAGCAGCAGCAACAAAAACUUCACCC-----CUUCCUAUCGAUGAAAA ((......((((....))))((..(((((((((((.....)))))).------....))))).)).))................-----................. ( -21.60) >DroYak_CAF1 44832 96 - 1 GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUGUGCAGCAGCAGAAGCAGAAGCAGCAGCGAAAACUUCACC----------CUAUCUAUAAAAA ((.....(((((....)))))...(((((.(.(((.....))).)))))).)).((((.....((....)).....))))...----------............. ( -22.60) >consensus GCAUUUCCGCAUUGUAAUGCGCCAGCUGCCAGACAAUUAAUGUCUGCAGCAG___________GCAGCAGCAAAAACUUCACC______CUUCCUAUCGAUAAAAA ((.....(((((....)))))...(((((.(((((.....))))))))))................))...................................... (-14.76 = -15.80 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:42 2006