Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,906,662 – 14,906,781 |
Length | 119 |
Max. P | 0.638306 |
Location | 14,906,662 – 14,906,781 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.02 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -26.13 |
Energy contribution | -25.93 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.90 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14906662 119 + 27905053 UGGGCGAGCAACAUCAUCAUCAUCAUCAUCUCUAGUAUCCGAAACCGAAUCGAAAACAACAUCAUCAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((..................................(((.......)))..........(((((((....)))))))))))(((((....)))))..((((.(......).)))). ( -29.20) >DroSec_CAF1 34037 113 + 1 UGGGCGAGCA------UCAUCAUCAUCAUCUCUAGUAUCCGAAACCGAAUCGAAAACAACAUCAUCAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((.....------.......................(((.......)))..........(((((((....)))))))))))(((((....)))))..((((.(......).)))). ( -29.20) >DroSim_CAF1 33953 113 + 1 UGGGCGAGCA------UCAUCAUCAUCAUCUCUAGUAUCCGAAACCGAAUCGAAAACAACAUCAUCAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((.....------.......................(((.......)))..........(((((((....)))))))))))(((((....)))))..((((.(......).)))). ( -29.20) >DroEre_CAF1 33443 110 + 1 UGGGCGAGCA------UCAUCAUUAUCAUCUCUAGUAUUCGAAACCGAAUCGAAAU---CAUCAUUAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((((...------...))..((((((((...(.(((((....))))))((...---..)).........))))))))))))(((((....)))))..((((.(......).)))). ( -30.40) >DroYak_CAF1 40409 96 + 1 UGGGCGAGCA------UCAUCAUCAUC--------------AAACCCAAUCGAAAU---CAUCAUUAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((((...------...))......--------------...............---...(((((((....)))))))))))(((((....)))))..((((.(......).)))). ( -26.50) >DroAna_CAF1 32104 95 + 1 UGGGCGAGCA------UCAUCAUCGGC---------------AGCCGAUUCGAAAA---CAUCAUCAUCGCCGGAUGAUGGCCCAGUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAC (((((.....------((...(((((.---------------..)))))..))...---...(((((((....))))))))))))((((....))))...((((.(......).)))). ( -28.80) >consensus UGGGCGAGCA______UCAUCAUCAUCAUCUCUAGUAUCCGAAACCGAAUCGAAAA___CAUCAUCAUCGCCGGAUGAUGGCCCGAUGGAAUGCCAUCUAUGCCACAGUUAAGAGGCAA .((((((............)).........................................(((((((....)))))))))))(((((....)))))..((((.(......).)))). (-26.13 = -25.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:38 2006