Locus 5676

Sequence ID 3R_DroMel_CAF1
Location 14,899,312 – 14,899,411
Length 99
Max. P 0.928549
window9277

overview

Window 7

Location 14,899,312 – 14,899,411
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.26
Mean single sequence MFE -30.53
Consensus MFE -22.90
Energy contribution -23.26
Covariance contribution 0.37
Combinations/Pair 1.28
Mean z-score -2.24
Structure conservation index 0.75
SVM decision value 1.19
SVM RNA-class probability 0.928549
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14899312 99 - 27905053
--GCCGGAGUUCAAUGCACUU---CGCUAUCUCAUAGCCAUAUUGCAUUGCAUUGGCUUUUCAGCGAACUCUGGCGAACUUCGAAAU----CAUCGAGGAUGCUGGCA
--((((((((((((((((...---.(((((...))))).....))))))......(((....)))))))))))))...((((((...----..))))))......... ( -35.40)
>DroSec_CAF1 26901 99 - 1
--GCCGGAGUUCAAUGCACUU---CGCUAUCUCAUAGCCAUAUUGCAUUGCAUUGGCUUUUCAGCGAACUCUGGCGAACUUCGAAAU----CAUCGAGGAUGCUGGCA
--((((((((((((((((...---.(((((...))))).....))))))......(((....)))))))))))))...((((((...----..))))))......... ( -35.40)
>DroSim_CAF1 26793 94 - 1
--GCCGGAGUUCAAUGCACUU---CGCUAUCUCAUAGCCAUAUUGCAUUGCAUUGGCUUUUCAGCGAACUCUGGCGAACUUCGAAAU----CAUCGAGGAUGC-----
--((((((((((((((((...---.(((((...))))).....))))))......(((....)))))))))))))...((((((...----..))))))....----- ( -35.40)
>DroEre_CAF1 26428 91 - 1
---UUGGAGUUCAAUGCACCG---CGCUAUCUCAUAACCA-------UUGCAUUGGCUUUUCAGCGAACUCUGGCGAACUUCGAAAU----CAUCGAGGUUGCUGGCA
---..(((((((((((((...---................-------.)))))).(((....))))))))))(((.((((((((...----..))))))))))).... ( -26.55)
>DroYak_CAF1 33412 91 - 1
---CUGGAGUUCAAUGCACCC---CGCUAUCUUAUAGCCA-------UUGCAUUGGCUUUUCAGCGAACUCUGGCGAAUUUCGAAAU----CACCGAGGAUGCUGGCA
---..(((((.(((((((...---.(((((...)))))..-------.))))))))))))((((((..(((.((.((.........)----).)))))..)))))).. ( -27.60)
>DroAna_CAF1 25605 99 - 1
AUGCUGGGGUUCAUUGCUCCUCCGCGCUAUCUCUUAA---------GUGGCAAUGGCUUUUUAGCGAAUUUAGUCGAACGCCGAAACAGACAAUCAAGGAUGCUGGCA
.(((..(.((((...((......))(((((.......---------)))))..((((..((..((.......))..)).))))..............)))).)..))) ( -22.80)
>consensus
__GCCGGAGUUCAAUGCACCU___CGCUAUCUCAUAGCCA______AUUGCAUUGGCUUUUCAGCGAACUCUGGCGAACUUCGAAAU____CAUCGAGGAUGCUGGCA
..((((((((((((((((.......((((.....))))..........)))))).(((....)))))))))))))...((((((.........))))))......... (-22.90 = -23.26 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:26 2006