| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,895,522 – 14,895,632 |
| Length | 110 |
| Max. P | 0.806605 |
| Location | 14,895,522 – 14,895,632 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.58 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -18.65 |
| Energy contribution | -20.35 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14895522 110 + 27905053 GCGAAAGGGUUUUCGCCUCCCUAUUUGGCUAGAGAAAACUCCGACAAGAUGGGAAAGUUGCAAGGCAACACAGAAAUGGGGAAUACCCUAUCUUUGCUCAACUAA---GAGAG ..((.(((((.(((.((((((..((((....(((....)))...))))..))))..(((((...)))))........)).))).))))).))....(((......---))).. ( -32.40) >DroSec_CAF1 23098 110 + 1 GCGAAAGGGUUUUCGCCUCCCUAUUUGGCUAGAGAAAACUCCGACAAGAUGGGAAAGUUGCAAGGCAACACAGAAAUGGGGAAUACCCUAUCUUUGCUCAAGUAA---GAGAG ..((.(((((.(((.((((((..((((....(((....)))...))))..))))..(((((...)))))........)).))).))))).))....(((......---))).. ( -32.40) >DroSim_CAF1 22971 110 + 1 GCGAAAGGGUUUUCGCCUCCCUAUUUGGCUUGAGAAAACUUCGACAAGAUGGGAAAGUUGCAAGGCAACACAGAUAUGGGGAAUACCCUAUCUAUGCUCAAGUAA---GAUAG ((((((....))))))....((((((.(((((((......................(((((...)))))..(((((.(((.....))))))))...))))))).)---))))) ( -32.70) >DroEre_CAF1 22595 107 + 1 GCGAAAGGGUUUUCGCCUCCCUAUUUGGCUAGAGAAAACUCAGACAAGAUGGGAAAGUUGUAUGGCAACACAGAAAUGGGGAAUACUCUAUCCUCCCUCAAGAGA----GA-- ..((.(((((.(((.((((((..((((.((.(((....))))).))))..))))..((((.....))))........)).))).))))).))....(((....))----).-- ( -29.40) >DroYak_CAF1 28617 109 + 1 GCGAAAGGGUUUUCGACUCCCUAUUUGGCUAGAGAAAACUCAGACGAUAUGGGAAAGUUUUAUGGCAACACGAAAAUGGGGAAUACUCUAUCUUCACUCAAGAAA----AAAG ..((.(((((.(((..(((((...(((.((.(((....))))).)))...))))...(((..((....))..)))..)..))).))))).)).............----.... ( -24.20) >DroAna_CAF1 22166 97 + 1 UUGGAAGGGUUUUCGCCUCCCGAUUUGGUUAGAAGAAAU---GGCAAG-----CCAGCUGCAAAUC------GAAAGUAAGAAUACCCUU--UUCGAUCAAUUUUAUAUCUUG ((((((((((.(((..((..(((((((..(((......(---((....-----))).)))))))))------)..))...))).)))).)--)))))................ ( -23.50) >consensus GCGAAAGGGUUUUCGCCUCCCUAUUUGGCUAGAGAAAACUCCGACAAGAUGGGAAAGUUGCAAGGCAACACAGAAAUGGGGAAUACCCUAUCUUCGCUCAAGUAA___GAAAG ((((((((((.(((.((((((...(((....(((....)))...)))...))))..(((((...)))))........)).))).)))))...)))))................ (-18.65 = -20.35 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:23 2006