Locus 5672

Sequence ID 3R_DroMel_CAF1
Location 14,893,461 – 14,893,551
Length 90
Max. P 0.558931
window9271

overview

Window 1

Location 14,893,461 – 14,893,551
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 86.70
Mean single sequence MFE -25.58
Consensus MFE -17.80
Energy contribution -18.00
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.558931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14893461 90 - 27905053
UACGAAUAUGAAUAAUUAUGACCUUCGGAUCGGCGGAUAGGUAAUAGGUAAUAGUUGUACUAUAAUUUUUCGUCUUGGCGGGGGUCGUCG------
.................((((((((((....((((((.((((.((((............)))).))))))))))....))))))))))..------ ( -22.00)
>DroSec_CAF1 21082 90 - 1
UACGAAUAUGAAUAAUUAUGACCUUCGGAUCGGCGGAUAGGUAAUAGGUAAUAGUUGUACUAUAACUAUCCGUCUUGGCGGGGGUCGUCG------
.................((((((((((....(((((((((...((((............))))..)))))))))....))))))))))..------ ( -29.60)
>DroSim_CAF1 20953 90 - 1
UACGAAUAUGAAUAAUUAUGACCUUCGGAUCGGUGGAUAGGUAAUAGGUAAUAGUUGUACUAUAACUAUCCGUCUUGGCGGGGGUCGUCG------
.................((((((((((....(..((((((...((((............))))..))))))..)....))))))))))..------ ( -25.60)
>DroEre_CAF1 20633 89 - 1
UACGAAUAUGAAUAAUUAUGACCUUCGGAUCGGCGGAUAGG-------UAAUAGUUGUACUAUAACUUUCAGUCUUGGCGGGGGUCGUCGCGUUCU
.........((((....((((((((((....(((.((.(((-------(.((((.....)))).)))))).)))....))))))))))...)))). ( -23.80)
>DroYak_CAF1 23587 83 - 1
UACGAUAAUCAAUAACUAUGACCUUCGGAUCGGCGGGUAGG-------UAAUAGUUGUACUAAGACUUUGGGUCUUGGCGGGGGUCGUCG------
.(((((..((.((((((((.((((((.(.....).)).)))-------).)))))))).(((((((.....))))))).))..)))))..------ ( -26.90)
>consensus
UACGAAUAUGAAUAAUUAUGACCUUCGGAUCGGCGGAUAGGUAAUAGGUAAUAGUUGUACUAUAACUUUCCGUCUUGGCGGGGGUCGUCG______
.................((((((((((....((((((.((..........((((.....))))..)).))))))....))))))))))........ (-17.80 = -18.00 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:20 2006