Locus 5671

Sequence ID 3R_DroMel_CAF1
Location 14,893,087 – 14,893,180
Length 93
Max. P 0.656431
window9270

overview

Window 0

Location 14,893,087 – 14,893,180
Length 93
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 74.41
Mean single sequence MFE -27.76
Consensus MFE -14.96
Energy contribution -16.34
Covariance contribution 1.38
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.54
SVM decision value 0.26
SVM RNA-class probability 0.656431
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14893087 93 - 27905053
ACUGCUGGAACUGAAAA------------CUGAAAAGAAUAUACC----CC-------AGUUGCCGAGUCAUCCUACACAUGACGGUUGUAUAGCUGGAAUGGCUGGAUUGUUACU
...((((((((((....------------................----.)-------)))).)).))).((((..(.(((..((((......))))..))))..))))....... ( -17.30)
>DroSec_CAF1 20698 109 - 1
ACAACUGGAACUGAAAACUGAACUUAAAACUGAAAAGAAUAUACAGUUGCC-------AGUUGCCGAGUCAUCCUACACAUGACGGCUGUAUAGCUGGGAUGGCUGGAUUGUUCCU
.((((((((((((((........))....((....))......))))).))-------)))))...((((((((..(....).(((((....)))))))))))))(((....))). ( -31.70)
>DroSim_CAF1 20574 104 - 1
ACAACUGGAACUGAAAA------------CUGAAAAGAAUAUACAGUUGCCAGUUGCCAGUUGCCGAGUCAUCCUACACAUGACGGCUGUAAAGCUGGGAUGGCUGGAUUGUUCCU
.((((((((((((..((------------(((...........)))))..))))).)))))))...((((((((..(....).(((((....)))))))))))))(((....))). ( -39.50)
>DroEre_CAF1 20275 96 - 1
A---CUGAAACUGGUACUGUAACUGAAAACUGAAAAGAAUCC-------CC-------AGUUGCCGAGUCAUC--ACACAUGACGGCUGGCUAGCUG-GAUAGCUGGAUUGUUCCU
.---........((.((............((....))(((((-------((-------(((((((.((((.((--(....))).))))))).)))))-)......))))))).)). ( -25.00)
>DroYak_CAF1 23243 79 - 1
A---CUGGAACUG-------------AAACUGAAAAGAAUCU-------CC-------AGUUGCCGAGUCAUC--ACACAUGACGGCUGG----CUG-GAUAGCUGGAUUGUUCCU
.---..(((((..-------------...((....))....(-------((-------(((((((.((((.((--(....))).))))))----)..-...)))))))..))))). ( -25.30)
>consensus
AC__CUGGAACUGAAAA_________AAACUGAAAAGAAUAUAC_____CC_______AGUUGCCGAGUCAUCCUACACAUGACGGCUGUAUAGCUGGGAUGGCUGGAUUGUUCCU
......(((((..................((....))..........................((.((((((((.........(((((....)))))))))))))))...))))). (-14.96 = -16.34 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:19 2006