Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,121,247 – 2,121,339 |
Length | 92 |
Max. P | 0.531694 |
Location | 2,121,247 – 2,121,339 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -16.86 |
Consensus MFE | -11.69 |
Energy contribution | -12.88 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.47 |
Structure conservation index | 0.69 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2121247 92 + 27905053 CCAAGGGUAAGCUAUACCAGCAUUUUAAAUCACUAGGAGUAGAAAUCAAUAAAAGACUUGCCAAGCCACGUUAUAGAAACAAUUACCCCUGA .((.((((((.((((.((((............)).)).))))............(((.((......)).)))..........)))))).)). ( -12.80) >DroSec_CAF1 264299 92 + 1 CCAAGGGUAAGCUGUACCAGCAUUUUAAAUCGCUAGGAGUAGAAAUCAAUAAAAGACUUGCCAAGGCACGUUAUAUACACCAUUACCCCUGA .((.((((((((((...))))..............((.((((....).......(((.(((....))).)))...))).)).)))))).)). ( -21.60) >DroSim_CAF1 282812 92 + 1 CCAAGGGUAAGCUGUACCAGCAUUUUAAAUCGCUAGGAGUAGAAAUCAAUAAAAGACUUGCCAAGGCACGUUAUAUACACCAUUACCCCUGA .((.((((((((((...))))..............((.((((....).......(((.(((....))).)))...))).)).)))))).)). ( -21.60) >DroEre_CAF1 267252 91 + 1 CCAAGAGUAAGCUGUCCCAGCUUAUUAAAUCAAUAAGCGUAAACAUCAAUCAACAACUUGUCAAGGCAAUUUAUAAAAACAAUUAAC-CUGA .....(((((((((...)))))))))..........((.(..(((.............)))..).))....................-.... ( -11.42) >consensus CCAAGGGUAAGCUGUACCAGCAUUUUAAAUCACUAGGAGUAGAAAUCAAUAAAAGACUUGCCAAGGCACGUUAUAUAAACAAUUACCCCUGA .((.((((((((((...)))).................................(((.(((....))).)))..........)))))).)). (-11.69 = -12.88 + 1.19)
Location | 2,121,247 – 2,121,339 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -15.02 |
Energy contribution | -15.40 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.25 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2121247 92 - 27905053 UCAGGGGUAAUUGUUUCUAUAACGUGGCUUGGCAAGUCUUUUAUUGAUUUCUACUCCUAGUGAUUUAAAAUGCUGGUAUAGCUUACCCUUGG .((((((((...(((.....)))..((((..((.(((.(((((..((((.(((....))).))))))))).))).))..)))))))))))). ( -22.00) >DroSec_CAF1 264299 92 - 1 UCAGGGGUAAUGGUGUAUAUAACGUGCCUUGGCAAGUCUUUUAUUGAUUUCUACUCCUAGCGAUUUAAAAUGCUGGUACAGCUUACCCUUGG .(((((((((.(.(((((......(((....)))(((.(((((..((((.(((....))).))))))))).))).))))).)))))))))). ( -27.00) >DroSim_CAF1 282812 92 - 1 UCAGGGGUAAUGGUGUAUAUAACGUGCCUUGGCAAGUCUUUUAUUGAUUUCUACUCCUAGCGAUUUAAAAUGCUGGUACAGCUUACCCUUGG .(((((((((.(.(((((......(((....)))(((.(((((..((((.(((....))).))))))))).))).))))).)))))))))). ( -27.00) >DroEre_CAF1 267252 91 - 1 UCAG-GUUAAUUGUUUUUAUAAAUUGCCUUGACAAGUUGUUGAUUGAUGUUUACGCUUAUUGAUUUAAUAAGCUGGGACAGCUUACUCUUGG ((((-(.(((((.........))))).)))))((((..((.......(((((..((((((((...))))))))..)))))....)).)))). ( -17.80) >consensus UCAGGGGUAAUGGUGUAUAUAACGUGCCUUGGCAAGUCUUUUAUUGAUUUCUACUCCUAGCGAUUUAAAAUGCUGGUACAGCUUACCCUUGG .((((((((((((((..............(((.(((((.......))))))))...((((((........))))))))))).))))))))). (-15.02 = -15.40 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:15 2006