| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,891,778 – 14,891,876 |
| Length | 98 |
| Max. P | 0.947832 |
| Location | 14,891,778 – 14,891,876 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -16.75 |
| Energy contribution | -20.25 |
| Covariance contribution | 3.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14891778 98 + 27905053 CAA-AUGCUUUAAUUGGGCGGUGGGCGGUGCAACAUGUGGUAUAUGCACCAUGUGUGUGGGCGACCAGGAAGUUGUCCGUGUUGUCCAUUUU-GAGGAGU (((-((((((.....)))))((((((((..(.(((((((((......)))))))))..(((((((......))))))))..)))))))))))-)...... ( -36.80) >DroSec_CAF1 19431 98 + 1 CAA-AUGCUUUAAUUGGGCGGUGGGCGGUGCAACAUGUGGUAUGUGCACCAUGUGUGUGGGCGACCAGGAAGCUGUCCAUGUUGUCCAUUUU-GAGGAGC ...-...((((((.(((((((((((((((...(((((((((......))))))))).(((....)))....)))))))))..))))))..))-))))... ( -38.20) >DroSim_CAF1 19301 98 + 1 CAA-AUGCUUUAAUUGGGCGGUGGGCGGUGCAACAUGUGGUAUGUGCACCAUGUGUGUGGGCGACCAGGAAGUUGUCCAUGUUGUCCAUUUU-GAGGAGC ...-...((((((.((((((((((((((((((.((((...)))))))))).....(.(((....))).).....))))))..))))))..))-))))... ( -35.50) >DroAna_CAF1 18902 82 + 1 CAAGCCG----AUGUAGGCGAUGGGUGUUGCACCA-GCAAUAUAACAACAACGAA---AAAACACCAGGAAGU----------GUCCGCUUUGGUGGCGA ...((((----....(((((....(((((((....-)))))))............---...((((......))----------)).)))))...)))).. ( -21.70) >consensus CAA_AUGCUUUAAUUGGGCGGUGGGCGGUGCAACAUGUGGUAUAUGCACCAUGUGUGUGGGCGACCAGGAAGUUGUCCAUGUUGUCCAUUUU_GAGGAGC .....(((((.....)))))((((((......(((((((((......)))))))))(((((((((......)))))))))...))))))........... (-16.75 = -20.25 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:15 2006