Locus 5668

Sequence ID 3R_DroMel_CAF1
Location 14,891,264 – 14,891,356
Length 92
Max. P 0.634254
window9265

overview

Window 5

Location 14,891,264 – 14,891,356
Length 92
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 86.26
Mean single sequence MFE -18.02
Consensus MFE -11.55
Energy contribution -11.51
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -2.22
Structure conservation index 0.64
SVM decision value 0.21
SVM RNA-class probability 0.634254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14891264 92 + 27905053
UUUUAGCCUUAUCUGGCUGAACAUGAACAUAU----AUAAAACCUACAUA-----UUCUCUGGUUAUAUCAGCACAGUCAAGUACUAGGAUUAUAAUUCAA
.(((((((......)))))))..((((....(----((((..((((..((-----((..((((((.....))).)))...)))).)))).))))).)))). ( -17.00)
>DroSec_CAF1 18921 97 + 1
UUUUAACCUUAUCUGGCUGAACAUGAACAUAU----AUAAAACCUACAUACUAUACUCUCUGGUUAUAUCAGCACAGUCGAGUACUAGGAUUAUAAUUCAA
.((((.((......)).))))..((((....(----((((..((((..((((..(((..(((((...)))))...)))..)))).)))).))))).)))). ( -13.30)
>DroSim_CAF1 18792 101 + 1
UUUUAGCCUUAUCUGGCUGAACAUGAACAUAUAUGUAUAAAACCUACAUACUAUACUCUCUGGUUAUAUCAGCACAGUCGAGUACUAGGAUUAUAAUUCAA
.(((((((......)))))))..((((....((((((.......))))))((((((((.((((((.....))).)))..))))).)))........)))). ( -23.50)
>DroEre_CAF1 18542 82 + 1
UUUUAGCCUUAUCUGGCUGAAC------AUAU----AUAAAACCUA---------CUCUCUGGUUAUAUCAGCACAGUCGAGUAGUAGGAUUAUAAUUCAA
.(((((((......))))))).------...(----((((..((((---------(((.((((((.....))).)))..))))))..)..)))))...... ( -21.00)
>DroYak_CAF1 21537 82 + 1
UUUUAGCCUUAUCUGGCUGAAC------AUAU----AUAAAACCUA---------CUCUCGUGUUAUAUCAGCACAGUCAAGUACUAGGAUUAUAAUUCAA
.(((((((......))))))).------...(----((((..(((.---------.....(((((.....)))))(((.....)))))).)))))...... ( -15.30)
>consensus
UUUUAGCCUUAUCUGGCUGAACAUGAACAUAU____AUAAAACCUACAUA_____CUCUCUGGUUAUAUCAGCACAGUCGAGUACUAGGAUUAUAAUUCAA
.......(((..((((((((.........(((....))).((((.................))))...))))).)))..))).....((((....)))).. (-11.55 = -11.51 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:14 2006