| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,886,400 – 14,886,494 |
| Length | 94 |
| Max. P | 0.566524 |
| Location | 14,886,400 – 14,886,494 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -19.28 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.27 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14886400 94 + 27905053 --UAUAGACCAUAU--AAAUAUA--------AUAUUAUAGACUUACCUCAAUAUAUUCGCAUGCGAAAGUUUAUUCAACAGCUGCACCUCCCGCAGCAUAUUCGGU --.....(((....--.......--------.....((((((((............(((....)))))))))))......(((((.......)))))......))) ( -16.10) >DroSec_CAF1 13924 88 + 1 --UAUAGACCAUA--------UA--------AUAUUAUAGACUUACCUCAAUAUAUUCGCAUGCGAGAGUUUAUUCAGCAGCUGCACCUCCCGCAGCAUAUUCGGU --.....(((...--------..--------.....((((((((............(((....)))))))))))......(((((.......)))))......))) ( -16.50) >DroSim_CAF1 13840 88 + 1 --UAUAGACCAUA--------UA--------AUAUUAUAGACUCACCUCAAUAUAUUCGCAUGCGAGAGUUUAUUCAGCAGCUGCACCUCCCGCAGCAUAUUCGGU --.....(((...--------..--------.....((((((((............(((....)))))))))))......(((((.......)))))......))) ( -18.10) >DroEre_CAF1 13906 89 + 1 CCUAUAC---------UCGUAUG--------AUAUUAUACACUUACCUCAAUAUAUUCGCAUGCGAGAGUUUGUUCAGCAGCUGCACCUCCCGCAGCAUAUUCGGU ((....(---------(((((((--------....((((............))))....)))))))).............(((((.......)))))......)). ( -20.40) >DroYak_CAF1 16837 106 + 1 CCCAUAGCCCAUAAUAUCAUAUGGAAUAUGGUUAUUAUACACUUACCUCAAUAUAUUCGCAUGCGAGAGUUUGUUUAGCAGCUGCACCUCCCGCAGCAUAUUCGGU .(((((..(((((......)))))..))))).............(((..(((((....(((.((....)).)))......(((((.......)))))))))).))) ( -26.00) >DroAna_CAF1 13990 83 + 1 --UAAAG-------------GGA--------GUUCUCUCGACUUACCUCAAUAUAUUGGCAUGCGACAGUUUGUUCAGCAGCUGGACUUCCCGCAGCAUGUUCGGU --...((-------------(((--------(((.....))))).)))......((((((((((........((((((...))))))........))))).))))) ( -18.59) >consensus __UAUAGACCAUA_______AUA________AUAUUAUAGACUUACCUCAAUAUAUUCGCAUGCGAGAGUUUAUUCAGCAGCUGCACCUCCCGCAGCAUAUUCGGU ............................................(((..(((((.((((....)))).............(((((.......)))))))))).))) (-12.02 = -12.27 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:11 2006