Locus 5665

Sequence ID 3R_DroMel_CAF1
Location 14,884,611 – 14,884,705
Length 94
Max. P 0.846896
window9260

overview

Window 0

Location 14,884,611 – 14,884,705
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 87.33
Mean single sequence MFE -33.50
Consensus MFE -26.30
Energy contribution -26.88
Covariance contribution 0.59
Combinations/Pair 1.17
Mean z-score -2.99
Structure conservation index 0.78
SVM decision value 0.77
SVM RNA-class probability 0.846896
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14884611 94 - 27905053
AACGUGCAACGAAUCGCGGUCGGGGUAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUGGCUGGCCAACUUAUUUCGCUGUGUGCGCCGGG
..((..((.((((...(((((((((((((.(((.((((((...))))))))).)))))))))))))..........))))...))..))..... ( -32.92)
>DroSec_CAF1 12235 87 - 1
AACGUGCGGCGAAUCGCAGUCGGGGCAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUGGCUGGCCAACUUAUUUCGCUGUGCG-------
..((..(((((((...(((((((((((((.(((.((((((...))))))))).)))))))))))))..........)))))))..))------- ( -42.32)
>DroSim_CAF1 12123 87 - 1
UACGUGAGGCGAAUUGCAGUCGGGGCAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUGGCUGGCCAACUUAUUUCGCUGUGUG-------
(((((((((..(.((((((((((((((((.(((.((((((...))))))))).)))))))))))))..))).)..)))))).)))..------- ( -35.80)
>DroEre_CAF1 12212 88 - 1
AACGUGCGGCGAAUCGCAGUCAGGGAAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUG----GCCAACUUAUUUCGCUGUGUG--CCGUG
..((..(((((((.....(((((((.(((.(((.((((((...))))))))).))).)))))----))........)))))))..))--..... ( -31.72)
>DroYak_CAF1 15109 88 - 1
AACGUGCGGCGAAUCGCAGUCAGGGAAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUG----GCCAACUUAUUUCGCUGUGUG--CCGGG
..((..(((((((.....(((((((.(((.(((.((((((...))))))))).))).)))))----))........)))))))..))--..... ( -31.72)
>DroAna_CAF1 12308 88 - 1
AACGUGCGGCGAAUCACAGCCGGAGUAUUAAAUGCAACGGAUUCUGGCGAUUAAAUGCCCUG----GCCAACUUAUUUCGCUGUGUG--CCUAG
..((..(((((((.....(((((.(((((.(((((..(((...))))).))).))))).)))----))........)))))))..))--..... ( -26.52)
>consensus
AACGUGCGGCGAAUCGCAGUCGGGGAAUUAAAUGCAACGGAUUCUGUUGAUUAAAUGCCCUG____GCCAACUUAUUUCGCUGUGUG__CCG_G
..((..(((((((....((((((((((((.(((.((((((...))))))))).)))))))))........)))...)))))))..))....... (-26.30 = -26.88 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:10 2006