Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,106,616 – 2,106,715 |
Length | 99 |
Max. P | 0.995885 |
Location | 2,106,616 – 2,106,715 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 70.20 |
Mean single sequence MFE | -17.48 |
Consensus MFE | -8.92 |
Energy contribution | -8.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.27 |
Mean z-score | -1.94 |
Structure conservation index | 0.51 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2106616 99 + 27905053 CAUUUCAAUUUCCAUUUUUAUGUCCAUUUCCAUUUCCAUGU------------CCAUGGACGUGCCCAUGUCGAAAUGCAAUUUUA-CCAAACAACCAGCUAGCCAGCCAGC ((((((......(((...(((((((((...(((....))).------------..)))))))))...)))..))))))........-...........(((.(....).))) ( -14.60) >DroSec_CAF1 249406 89 + 1 CAUUU------CCAUUUUCAUGUCCAUUUCCAUUUCCAUGU------------CCAUGGACGUGCCCAUGUCGAAAUGCAAUUUUA-CCAAACAGUCA----GUCAGGCAGC (((((------((((...(((((((((...(((....))).------------..)))))))))...)))..))))))........-.......(((.----....)))... ( -18.30) >DroSim_CAF1 252622 87 + 1 CAUUUCCAUUUCCAUUUUCAUGUCCAUUUCCAUUUCCAUGU------------CCAUGGACGUGCCCAUGUCGAAAUGCAAUUUUA-CCAAACAGCC------------AGC ......(((((((((...(((((((((...(((....))).------------..)))))))))...)))..))))))........-..........------------... ( -16.80) >DroEre_CAF1 251475 83 + 1 UAUUUCGAUUUCGAUUUCCAUUUCUGUGUCCAUUUCCAUGU------------CCAUGGACGUGGCCAUGUCGAAAUACAAUUUUA-CC----------------AGCCAGC .......((((((((..((((.((((((..(((....))).------------.)))))).))))....)))))))).........-..----------------....... ( -20.60) >DroAna_CAF1 224325 97 + 1 CACUUCCACUUCAAUUUUCAAGUCCACAUCCGCGUCCCUGUCCACAUCCAGAUGCAUGGACGUGCCCAUAUCGAAAUGCAAUUUUCACC---------------UUGCGAUG ..........................(((((((((((.(((............))).))))))).............((((........---------------)))))))) ( -17.10) >consensus CAUUUCCAUUUCCAUUUUCAUGUCCAUUUCCAUUUCCAUGU____________CCAUGGACGUGCCCAUGUCGAAAUGCAAUUUUA_CCAAACA__C________AGCCAGC ........................(((((((((.((((((..............)))))).)))........)))))).................................. ( -8.92 = -8.92 + -0.00)
Location | 2,106,616 – 2,106,715 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 70.20 |
Mean single sequence MFE | -25.74 |
Consensus MFE | -12.84 |
Energy contribution | -12.44 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.33 |
Mean z-score | -2.41 |
Structure conservation index | 0.50 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2106616 99 - 27905053 GCUGGCUGGCUAGCUGGUUGUUUGG-UAAAAUUGCAUUUCGACAUGGGCACGUCCAUGG------------ACAUGGAAAUGGAAAUGGACAUAAAAAUGGAAAUUGAAAUG (((((....)))))...........-........(((((((((((......((((((..------------.(((....)))...))))))......)))....)))))))) ( -24.80) >DroSec_CAF1 249406 89 - 1 GCUGCCUGAC----UGACUGUUUGG-UAAAAUUGCAUUUCGACAUGGGCACGUCCAUGG------------ACAUGGAAAUGGAAAUGGACAUGAAAAUGG------AAAUG ..((((.(((----.....))).))-))......((((((..(((...((.((((((..------------.(((....)))...)))))).))...))))------))))) ( -25.60) >DroSim_CAF1 252622 87 - 1 GCU------------GGCUGUUUGG-UAAAAUUGCAUUUCGACAUGGGCACGUCCAUGG------------ACAUGGAAAUGGAAAUGGACAUGAAAAUGGAAAUGGAAAUG ((.------------.(....)..)-)....((.((((((..(((...((.((((((..------------.(((....)))...)))))).))...))))))))).))... ( -22.70) >DroEre_CAF1 251475 83 - 1 GCUGGCU----------------GG-UAAAAUUGUAUUUCGACAUGGCCACGUCCAUGG------------ACAUGGAAAUGGACACAGAAAUGGAAAUCGAAAUCGAAAUA .......----------------..-.....(((.((((((((((..(((.(((....)------------)).)))..)))....((....))....)))))))))).... ( -20.60) >DroAna_CAF1 224325 97 - 1 CAUCGCAA---------------GGUGAAAAUUGCAUUUCGAUAUGGGCACGUCCAUGCAUCUGGAUGUGGACAGGGACGCGGAUGUGGACUUGAAAAUUGAAGUGGAAGUG ((((....---------------))))....((.(((((((((.....((((((((......))))))))..((((..(((....)))..))))...))))))))).))... ( -35.00) >consensus GCUGGCU________G__UGUUUGG_UAAAAUUGCAUUUCGACAUGGGCACGUCCAUGG____________ACAUGGAAAUGGAAAUGGACAUGAAAAUGGAAAUGGAAAUG ..................................((((((..((((((....))))))..............((((...((....))...))))............)))))) (-12.84 = -12.44 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:13 2006