| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,856,832 – 14,856,935 |
| Length | 103 |
| Max. P | 0.893920 |
| Location | 14,856,832 – 14,856,935 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.99 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -15.19 |
| Energy contribution | -15.83 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14856832 103 - 27905053 UAACUAC----AAAUAACAAUCACAUGGAUAUUCUGAAAGCUGAAAUAGCGCGAAAGCGCAAGCUGCUGGAGCAAAGGCAGCUGGUGGACGAAAAGAAGAAGUACUU ...((((----.....................................((((....)))).(((((((........))))))).))))................... ( -25.60) >DroVir_CAF1 1955 98 - 1 UGUAAAU----AAAUA-----GCAAUGGAGAUAUUAAAAGCAGAAAUCGCUCGGAAACGCAAGUUACUUGAGGAAAAGCAAUUAGUGGAUGAUAAGAAAAAGUUCUU .......----.....-----..........((((((..((.....((.(((((.(((....))).).))))))...))..))))))......(((((....))))) ( -11.60) >DroSec_CAF1 1939 103 - 1 UAACAAC----AAAUAACAAUCACAUGGAUAUUCUAAAAGCUGAAAUAGCGCGAAAGCGCAAGCUGCUGGAGCAAAAGCAGCUGGUGGACGAAAAGAAGAAGUACUU .......----.........((((........................((((....)))).(((((((........))))))).))))................... ( -25.70) >DroEre_CAF1 1970 103 - 1 UAAAAAC----AAAUCGCAUUCAAAUGGAUAUUCUGAAAGCUGAAAUAGCUCGAAAGCGCAAGCUGCUGGAACAAAAGCAGCUGGUGGACGAAAAGAAGAAGUACUU .......----..(((.(((....)))))).((((....((((...))))(((....(((.(((((((........))))))).)))..)))..))))......... ( -21.00) >DroYak_CAF1 2383 103 - 1 UAACAAC----AAAUCGCAUUCAAAUGGAUAUUCUGAAAGCUGAAAUAGCUCGAAAGCGCAAGCUGCUCGAGCAAAAGCAGCUGGUGGACGAAAAUAAGAAGUAUUU .......----...(((.((((....))))..((((..(((((.....((((((.(((....)))..)))))).....)))))..)))))))............... ( -30.20) >DroAna_CAF1 1960 106 - 1 UAAAAGUACAUAAAUAUCG-UUAAAUGGAUAUUCUUAAGGCAGAAAUUGCUCGCAAGCGAAAGCUUCUCGAGCAGAAGCAGCUGGUGGACGACAAAAAAAAGUUUUU .....((.(((.((((((.-.......)))))).....(((.(...(((((((.((((....))))..)))))))...).))).))).))................. ( -24.50) >consensus UAAAAAC____AAAUAACA_UCAAAUGGAUAUUCUGAAAGCUGAAAUAGCUCGAAAGCGCAAGCUGCUGGAGCAAAAGCAGCUGGUGGACGAAAAGAAGAAGUACUU ................................((((..(((((.....((((...(((....)))....)))).....)))))..)))).................. (-15.19 = -15.83 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:00 2006