Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,845,240 – 14,845,341 |
Length | 101 |
Max. P | 0.643541 |
Location | 14,845,240 – 14,845,341 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.80 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -17.64 |
Energy contribution | -18.08 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.64 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14845240 101 + 27905053 UCUUGAGCAAACACUAC------CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUUAGCC---ACCCAUGUAGUGAUGUAGUG ...........((((((------....((((((..........(((((....))))).((((.(((((..(....)..)))))))))---.....))).)))..)))))) ( -27.10) >DroSec_CAF1 7929 104 + 1 ACUUGAGCAAACACUAC------CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCCACCACCCAUGUAGUGAUGUAGUG ...........((((((------....((((((..........(((((....))))).(((((((.((..(....)..)))))))))........))).)))..)))))) ( -29.40) >DroEre_CAF1 17222 85 + 1 AC---------------------CACCUACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACUCUUGAGCC---ACCCAUGUAGUG-UGUAGUG ..---------------------...(((((((..((......(((((....))))).((((((..(((((....).))))))))))---......))..))-))))).. ( -28.60) >DroYak_CAF1 8267 99 + 1 UCUUGAGCAAACACUAUAACAAAAACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCC---ACCCAUGUAG--------UG ...........(((((((.........................(((((....))))).(((((((.((..(....)..)))))))))---.....)))))--------)) ( -25.70) >consensus ACUUGAGCAAACACUAC______CACCCACACAAAACCCUAAUUGCCGAGAUUGGCACGGCUCAAAGGAGCGCCGGACCCUUGAGCC___ACCCAUGUAGUG_UGUAGUG ...........................((((((..........(((((....))))).(((((((.((..(....)..)))))))))........))).)))........ (-17.64 = -18.08 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:54 2006