| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,841,579 – 14,841,679 |
| Length | 100 |
| Max. P | 0.810476 |
| Location | 14,841,579 – 14,841,679 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.35 |
| Mean single sequence MFE | -27.95 |
| Consensus MFE | -13.80 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14841579 100 + 27905053 -----------ACCU---CGUCGGAUGCCAAGAAGU------CCAAGAAGUUCGGACGCAGCAAGUCCAGUGACAUAUUAAAAAAGGAAUCUGCUGCCUUGCCCUACGACAAGGGAAAGA -----------.(((---.((((...(.((((..((------((.........))))((((((..(((.................)))...)))))))))).)...)))).)))...... ( -30.33) >DroVir_CAF1 19370 88 + 1 -----------A---------------CAAAGAAAU------CCAAGAAAUUCGGACGCAGCAAGUCGAGCGACAUCUUAAAAAAGGAAUCUGUUGCCUUGCCCUACGACAAGGGCAAGA -----------.---------------........(------((((....)).))).((((((.(((....))).((((.....))))...))))))((((((((......)))))))). ( -27.50) >DroGri_CAF1 47155 94 + 1 -----------A--------GCGGAU-CGAAGAAAA------CGAAGAAGUUCGGACGCAGCAAAUCGAGCGAUAUAUUAAAAAAGGAAUCUGUUGCCUUGCCCUACGACAAGGGGAAGA -----------.--------(((..(-((((.....------........))))).)))..........((((((.(((........))).))))))(((.((((......)))).))). ( -20.52) >DroWil_CAF1 44093 100 + 1 -----------GCCA---CCGAUGGCUCCAAAAAGU------CCAAGAAAUUCGGACGCAGCAAGUCUAGCGAUAUCUUAAAAAAGGAAUCUGUUGCCUUGCCAUACGACAAGGGCAAGA -----------(((.---.(((((((........((------((((....)).))))((((((.(.....)(((.((((....)))).)))))))))...))))).)).....))).... ( -28.60) >DroMoj_CAF1 19200 88 + 1 -----------A---------------CAAAGAAAU------CCAAGAAAUUCGGACGCAGCAAAUCCAGCGACCUCUUAAAAAAGGAAUCUGUUGCCUUGCCCUACGACAAGGGGAAGA -----------.---------------........(------((((....)).))).((((((..(((.................)))...))))))(((.((((......)))).))). ( -20.13) >DroAna_CAF1 29765 120 + 1 CCUCCGCCUCCACCGCGGCCUCGGACGCCAAGAAGUCGUCGUCGAAGAAGUUCGGCCGGAGCAAGUCCAGCGACAUCUUAAAAAAGGAAUCUGCUGCCUUGCCCUACGACAAGGGCAAGA ..............(((((...(((..((((((.(((((.((((((....)))))).(((.....))).))))).))))......))..))))))))((((((((......)))))))). ( -40.60) >consensus ___________A_________CGGA__CCAAGAAAU______CCAAGAAAUUCGGACGCAGCAAGUCCAGCGACAUCUUAAAAAAGGAAUCUGUUGCCUUGCCCUACGACAAGGGCAAGA .........................................................((((((.(((....))).((((.....))))...))))))(((.((((......)))).))). (-13.80 = -14.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:53 2006