| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,839,564 – 14,839,668 |
| Length | 104 |
| Max. P | 0.821492 |
| Location | 14,839,564 – 14,839,668 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.24 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -19.07 |
| Energy contribution | -19.93 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14839564 104 - 27905053 CUUUGUACAACAUUCAGUUUUUUUUUUUUAGUUUUUAA--UCGUGAUUUAGAGACAUUCAGUUGGUGGCAUGCAAUUUGUGCUGCUAAUUGGGUAAACAAUA--UAUA ..((((........................((((((((--.......))))))))((((((((((..((((.......))))..))))))))))..))))..--.... ( -24.80) >DroSec_CAF1 2271 101 - 1 CUUUGUACAACAUUCAGUUUUUUUUUUUUAGU-UUUAA--UCGGUAAUUAGAGACAUUCAGU-GAUAGCAUGCA-UUUGUGCUGCUAAUCGAGUAAACAAUA-GUAU- ....(((((((.....)))...........((-((...--(((((.........(((...))-).(((((.(((-....)))))))))))))..))))....-))))- ( -15.60) >DroSim_CAF1 4334 102 - 1 CUUUGUACAACAUUCAGUUUUUU----UUAGUUUUUAA--UCGUAAUUUAGAGACAUUCAGUUGGUGGCAUGCAAUGUGUGCUGCUAAUUGGGUAAACAAUAUGUAUA ...((((((..............----...((((((((--.......))))))))((((((((((..((((((...))))))..))))))))))........)))))) ( -28.80) >DroEre_CAF1 11618 98 - 1 CUUUGUACAACAUUCAAUUUU------UUAGUUUUUAA--UCGUAAUUUAGAGACAUUCAGUUGGUGGCAUGCAAUUUGUGCUGCUAAUUGGGUAAACAAUA--UCUA ..((((...............------...((((((((--.......))))))))((((((((((..((((.......))))..))))))))))..))))..--.... ( -24.80) >DroYak_CAF1 2650 98 - 1 AUUUGUACAACAUUCAAUUUU------UUAGUUUUUAA--UAGUAAUUUAGAGACAUUCAGUUGGUGGCAUGCAAUUUGUGCUGCUAAUUGGGUAAACAAUA--UGUA ..((((...............------...((((((((--.......))))))))((((((((((..((((.......))))..))))))))))..))))..--.... ( -24.80) >DroAna_CAF1 27503 101 - 1 UUUUGUACAACAUUCAUUUUAGU----UUCGUAAUUAAAUUGGUAAUUUAGAGACAUUCAAUUCGUUGCAUGCAAGUUGUGCGGCUAAUUG-GCAAACAAUA--UGUA .(((((...............((----(((..(((((......)))))..)))))...(((((.(((((((.......))))))).)))))-))))).....--.... ( -19.50) >consensus CUUUGUACAACAUUCAGUUUUUU____UUAGUUUUUAA__UCGUAAUUUAGAGACAUUCAGUUGGUGGCAUGCAAUUUGUGCUGCUAAUUGGGUAAACAAUA__UAUA ..((((........................((((((((.........))))))))((((((((((((((((.......))))))))))))))))..))))........ (-19.07 = -19.93 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:52 2006