Locus 5651

Sequence ID 3R_DroMel_CAF1
Location 14,835,658 – 14,835,778
Length 120
Max. P 0.562927
window9228

overview

Window 8

Location 14,835,658 – 14,835,778
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -37.17
Consensus MFE -35.39
Energy contribution -35.50
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.56
Structure conservation index 0.95
SVM decision value 0.06
SVM RNA-class probability 0.562927
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14835658 120 - 27905053
GUUGGUAUUCUGCAGAGUUACUGUUGGUUGCCAUUGGCAUCAUCGCCGUCUGCAGAUAUUGGCCAUUGGCUGUUUGUCUUUGCGCAGCUUAUCUAAUGGCCCGGCUAAAAGAUAAACAAG
((..((((.(((((((((.((.....)).))....(((......))).)))))))))))..)).......(((((((((((..((.(((........)))...))..))))))))))).. ( -39.10)
>DroSec_CAF1 13874 120 - 1
GUUGGUAUUUGGCAGAGUUACUGUUGGUUGCCAUUGGCAUCAUCGCCGUCUGCAGAUAUUGGCCAUUGGCUGUUUGUCUUUGCACAGCUUAUCUAAUGGCCCGGCUAAAAGAUAAACAAG
........(..((((.....))))..)..((((.((((...(((((.....)).)))....)))).))))(((((((((((((...(((........)))...))..))))))))))).. ( -36.50)
>DroSim_CAF1 14013 120 - 1
GUUGGUAUUUUGCAGAGUUACUGUUGGUUGCCAUUGGCAUCAUCGCCGUCUGCAGAUAUUGGCCAUUGGCUGUUUGUCUUUGCACAGCUUAUCUAAUGGCCCGGCUAAAAGAUAAACAAG
((..((((((.(((((((.((.....)).))....(((......))).)))))))))))..)).......(((((((((((((...(((........)))...))..))))))))))).. ( -35.90)
>consensus
GUUGGUAUUUUGCAGAGUUACUGUUGGUUGCCAUUGGCAUCAUCGCCGUCUGCAGAUAUUGGCCAUUGGCUGUUUGUCUUUGCACAGCUUAUCUAAUGGCCCGGCUAAAAGAUAAACAAG
((..((((.(((((((((.((.....)).))....(((......))).)))))))))))..)).......(((((((((((((...(((........)))...))..))))))))))).. (-35.39 = -35.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:40 2006