Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,104,821 – 2,104,931 |
Length | 110 |
Max. P | 0.883822 |
Location | 2,104,821 – 2,104,931 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -21.15 |
Energy contribution | -20.85 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.26 |
Mean z-score | -2.03 |
Structure conservation index | 0.60 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2104821 110 - 27905053 AACCCUUAAUCCCACCCAGUCCA------CUCACCUUCCUCUAGUCCGCGUCCAAUCUCAUCGGAUGUGAGCUUGGGGAAGCUGACCUGCAGGGAGUGACCGUUGAAGAAGUAGCU (((..(((.((((...(((....------.(((.(((((((.((..(((((((.........)))))))..)).))))))).))).)))..)))).)))..)))............ ( -34.40) >DroPse_CAF1 223918 97 - 1 -------------UUCCGUUCG------UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGGCCAUUAAAGAAGUAGCU -------------..((((((.------.......((((((((((..((((((.........))))))..))))))))))((((.....))))))))))................. ( -35.50) >DroGri_CAF1 255877 97 - 1 -------------AGUUUUCGA------GCUUACCUUCUUCGAGGCCGCGUCCAAUCUCCUCGGAUGUCAAUUUGGGGAAGCUGACCUGCAGCGAGUGCCCGUUGAAGAAGUAGCU -------------........(------(((...(((((((((((.(((........(((((((((....))))))))).((((.....))))..))).)).))))))))).)))) ( -35.70) >DroEre_CAF1 249893 99 - 1 -----------------AGCCAACUGUUUCCUACCUUCCUCUAGGCCGCGUCCAAUCUCCUCGGAUGUGAGCUUGGGGAAGCUGACCUGCAGGGAGUGCCCGUUGAAGAAGUAGCU -----------------(((..(((.((((..(((((((.(((((((((((((.........))))))).)))))))))))..........(((....))))).)))).))).))) ( -34.50) >DroYak_CAF1 251370 98 - 1 -----------------GGGAAACU-UUUCUUACCUUCCUCUAGUCCGCGUCCAAUCUCAUCGGACGUGAGCUUGGGGAAGCUGACCUGCAGGGAAUGCCCGUUGAAGAAGUAGCU -----------------((....))-((((((..(((((((.((..(((((((.........)))))))..)).)))))))..........(((....)))....))))))..... ( -34.20) >DroPer_CAF1 225858 97 - 1 -------------UUCCAUUCG------UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGGCCAUUAAAGAAGUAACU -------------..((((((.------.......((((((((((..((((((.........))))))..))))))))))((((.....))))))))))................. ( -35.90) >consensus _______________CCAGUCA______UCUUACCUUCCUCGAGCCCGCGUCCAAUCUCAUCGGAUGUCAGCUUGGGGAAGCUGACCUGCAGCGAAUGCCCGUUGAAGAAGUAGCU ..............................(((((((((((.(((..((((((.........))))))..))).)))))))(((.....)))..................)))).. (-21.15 = -20.85 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:11 2006