Locus 5648

Sequence ID 3R_DroMel_CAF1
Location 14,833,352 – 14,833,472
Length 120
Max. P 0.539344
window9221

overview

Window 1

Location 14,833,352 – 14,833,472
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -37.40
Consensus MFE -36.13
Energy contribution -36.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.97
SVM decision value 0.01
SVM RNA-class probability 0.539344
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14833352 120 - 27905053
GCUGUCUGCACUUUUUGCAUUUAAUAGGCCGCCAUGUGGACUUGGUCGGUAAUGAAAACAAAGCCCGGGGAGCAGCAACUACCAGGAAGCAGAAGUAGCAGAAGCUGCAGCAGAAGCAUC
(((.(((((...((((((.........(((((((........))).))))..............((.((.((......)).)).))..))))))(((((....))))).))))))))... ( -38.10)
>DroSec_CAF1 11540 120 - 1
GCUGUCUGCACUUUUUGCAUUUAAUAGGCCGCCAUGUGGACUUGGUCGGUAAUGAAAACAAAGCCCGGGGAGCAGCAACUACCAGGAAGCAGAAAUAGCAGAAGCUGCAGCAGAAGCAUC
(((.(((((..(((((((.........(((((((........))).))))..............((.((.((......)).)).))..)))))))..((((...)))).))))))))... ( -35.70)
>DroSim_CAF1 11689 120 - 1
GCUGUCUGCACUUUUUGCAUUUAAUAGGCCGCCAUGUGGACUUGGUCGGUAAUGAAAACAAAGCCCGGGGAGCACCAACUACCAGGAAGCAGAAGUAGCAGAAGCUGCAGCAGAAGCAUC
(((.(((((...((((((..........((((...)))).((((((.(((..((....))..))).((......))....))))))..))))))(((((....))))).))))))))... ( -38.40)
>consensus
GCUGUCUGCACUUUUUGCAUUUAAUAGGCCGCCAUGUGGACUUGGUCGGUAAUGAAAACAAAGCCCGGGGAGCAGCAACUACCAGGAAGCAGAAGUAGCAGAAGCUGCAGCAGAAGCAUC
(((.(((((...((((((.........(((((((........))).))))..............((.((.((......)).)).))..))))))(((((....))))).))))))))... (-36.13 = -36.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:33 2006