Locus 5645

Sequence ID 3R_DroMel_CAF1
Location 14,832,379 – 14,832,499
Length 120
Max. P 0.898808
window9210

overview

Window 0

Location 14,832,379 – 14,832,499
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -35.00
Consensus MFE -35.59
Energy contribution -35.37
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 1.02
SVM decision value 1.00
SVM RNA-class probability 0.898808
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14832379 120 + 27905053
CAUGUUUGACAAUUGUCGUUGGAUAACGGCUAAAUCGCCAUAAAAGUGUAUAAUAGCCAUAUAGAGGGCUCAUGCCAUGUACUACCAUAAUUGUGGCUUGGGCCAGGCUAUGAUCUCCAU
.......(((....)))..((((....(((((...(((.......))).....))))).(((((..((((((.((((((............)))))).))))))...)))))...)))). ( -35.60)
>DroSec_CAF1 10553 120 + 1
CAUGUUUGACAAUUGUCGUUGGAUAACGGCUAAAUCGCCAUAAAAGUGUAUAAUAGCCAUAUAGAGGGCUCAUGCCAUGUACUACCAUAAUUGUGGCUUGGGCCAGGCUAUGAUCUCCGU
.......(((....)))...(((....(((((...(((.......))).....))))).(((((..((((((.((((((............)))))).))))))...)))))...))).. ( -34.90)
>DroSim_CAF1 10716 119 + 1
CAUGUUUGACAAUUGUCGUUGGAUAACGGCUA-AUCGCCAUAAAAGUGUAUAAUAGCCAUAUAGAGGGCUCAUGCCAUGUACUACCAUAAUUGUGGCUUGGGCCAGGCUAUGAUCUCCGU
.......(((....)))...(((....(((((-..(((.......))).....))))).(((((..((((((.((((((............)))))).))))))...)))))...))).. ( -34.50)
>consensus
CAUGUUUGACAAUUGUCGUUGGAUAACGGCUAAAUCGCCAUAAAAGUGUAUAAUAGCCAUAUAGAGGGCUCAUGCCAUGUACUACCAUAAUUGUGGCUUGGGCCAGGCUAUGAUCUCCGU
.......(((....)))..((((....(((((...(((.......))).....))))).(((((..((((((.((((((............)))))).))))))...)))))...)))). (-35.59 = -35.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:23 2006