| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,830,889 – 14,831,003 |
| Length | 114 |
| Max. P | 0.727832 |
| Location | 14,830,889 – 14,831,003 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.22 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14830889 114 - 27905053 AAUUAAUUAUGUAGAAAAAAGGAAGCGCGAGAAAAGAAACGUAAGUUGAAACUGCAGAGGAAUGAAUGCUACUUUGAGUAGCAAAAACAUA------UAAAAUAUGCAUAUAAAGCUUAA ......................((((((.((......(((....)))....))))......(((..((((((.....))))))....((((------(...)))))))).....)))).. ( -17.20) >DroSec_CAF1 9034 114 - 1 AAUUAAUUAUGUAGAAAAAAGGAAACGCGAGAAAAGAAACGUGAGUUGAAACUGCAGAGGAAUGAAUGCUCCUUUGAGUUGCAAAAACAUA------UAAAAUAUGCAUAUAAAGCUUAA .......((((((.......(....)((.........(((....)))..((((.(((((((........))))))))))))).........------.......)))))).......... ( -22.70) >DroSim_CAF1 9191 120 - 1 AAUUAAUUAUGUAGAAAAAAGGAAGCGCGAGAAAAGAAACAUGAGUUGAAACUGCAGAGGAAUGAAUGCUCCUUUGAGUAGCAAAAACAUAUAAAUAUAAAAUAUGCAUAUGAAGCUUAA ......................((((...................(((..(((.(((((((........))))))))))..)))...(((((..((((...))))..)))))..)))).. ( -19.50) >consensus AAUUAAUUAUGUAGAAAAAAGGAAGCGCGAGAAAAGAAACGUGAGUUGAAACUGCAGAGGAAUGAAUGCUCCUUUGAGUAGCAAAAACAUA______UAAAAUAUGCAUAUAAAGCUUAA .......((((((.......(....)((.........(((....)))...(((.(((((((........)))))))))).))......................)))))).......... (-16.27 = -16.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:14 2006