Locus 5641

Sequence ID 3R_DroMel_CAF1
Location 14,830,455 – 14,830,575
Length 120
Max. P 0.907481
window9199

overview

Window 9

Location 14,830,455 – 14,830,575
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -18.75
Consensus MFE -13.43
Energy contribution -13.87
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.72
SVM decision value 1.05
SVM RNA-class probability 0.907481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14830455 120 - 27905053
GAAAAGCUUAAAGCCACGAACGGAAAAUGUGUUCUGCACCCAAAAACUGCAAAAUAAACAAAUACACAUUGCGGAACACACACAUAUCCAUCCCCAUACGUAAUAAGCAGCCAGCCAGAU
.....(((((...((......))....(((((((((((...............................))))))))))).......................)))))............ ( -19.98)
>DroSec_CAF1 8623 108 - 1
----AGCUUAAAGCCACGAACGGCAAAUGUGUUCUGCAUUCAAAAAUUGCAAAAUAAACAAAUACACAUUUCGGAUAACACACAUAU----CCCCAUACGCAAUGAGCAG----CCAGAU
----.(((((..(((......)))((((((((..((((.........))))............)))))))).(((((.......)))----))..........)))))..----...... ( -20.74)
>DroSim_CAF1 8784 97 - 1
GAAAAGCUUAAAGCCACGAACGGCAAAUGUGUUCUGCAUCCAAAAACUGCAAAAUAAACAAAUACACAUAUC-------------------CCCUAUACGCAAUGAGCAG----CCAGAU
.....(((((..(((......)))..((((((..((((.........))))............))))))...-------------------............)))))..----...... ( -15.54)
>consensus
GAAAAGCUUAAAGCCACGAACGGCAAAUGUGUUCUGCAUCCAAAAACUGCAAAAUAAACAAAUACACAUUUCGGA__ACACACAUAU____CCCCAUACGCAAUGAGCAG____CCAGAU
.....(((((..(((......))).(((((((..((((.........))))............))))))).................................)))))............ (-13.43 = -13.87 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:13 2006