Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,830,295 – 14,830,415 |
Length | 120 |
Max. P | 0.701165 |
Location | 14,830,295 – 14,830,415 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -25.98 |
Energy contribution | -25.76 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.93 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14830295 120 + 27905053 CCCCAAAAUGUGGCGGUGGCCUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAUCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU .......(((((((((..(.......)..))))..(((((((.(((((((...............)))))))((..((.((.....)).))..))......))))))).......))))) ( -28.46) >DroSec_CAF1 8469 120 + 1 CCCCAAAAUGUGGCGGUGACUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCCAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU .......(((((((((..((....).)..))))..(((((((.(((((((...............)))))))................(....).......))))))).......))))) ( -25.96) >DroSim_CAF1 8630 120 + 1 CCCCAAAAUGUGGCGGUGGCUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU .......(((((((((((((........))))).)))).....(((((((...............)))))))(((((..((((.....(....).....)))))))))........)))) ( -29.06) >consensus CCCCAAAAUGUGGCGGUGGCUUUUGUUUGCCGCUUGCCGAAAAUUUGCUAAAAUACAACCUAAAAUAGCAAAGCCAGCCGAGUAAAUCCGAAAGCAAAAACUUUUGGCCAUAAAGCACAU .......(((((((((..((....).)..))))..(((((((.(((((((...............)))))))................(....).......))))))).......))))) (-25.98 = -25.76 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:12 2006