Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,101,572 – 2,101,664 |
Length | 92 |
Max. P | 0.940321 |
Location | 2,101,572 – 2,101,664 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 69.73 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -13.98 |
Energy contribution | -14.06 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.47 |
Mean z-score | -1.68 |
Structure conservation index | 0.64 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2101572 92 - 27905053 GUCUUUCCGCGGGCAAGGCCAGCUGAAGUGCACUCAACAAAUUCGGCUAGCCUUUUCUGUAAAAAA--AAGUUCAUUCUGUGAUAUUAGACAUU ((((....(((((.(((((.(((((((..............))))))).))))).)))))......--....((((...))))....))))... ( -25.04) >DroSec_CAF1 244510 94 - 1 GGCUUUCCGCGGGCAAGGCCAGCCGAAGUGCACUGGAAAAUUUCGGUUGGCCUUUUUCAUAAAAAAAAGAGUUAAUUCUUAACCAUUAAAUAUU ((........(((.(((((((((((((((..........))))))))))))))).)))........(((((....)))))..)).......... ( -28.90) >DroSim_CAF1 247674 93 - 1 GGCUUUCCGCGGGCAAGGCCAACCGAAGUGCACUUUAAAAAAUCGGUUUGCGUUUUCCGUAAA-AAAAGAGUUCUUUCUUAACCAUUAAAUAUA ((......(((((.((.((.((((((..(..........)..)))))).)).)).)))))...-..(((((....)))))..)).......... ( -20.60) >DroEre_CAF1 246707 92 - 1 UGCUUACCACGGGCAAGGCCAGUCGGAGUGCACUUAGCAAAUUCGGUUAACCUUUUCCGUAGAA--AAGAGUCCAGCUUUUAUCAAUAAAGAAG ..(((...(((((.((((..(..((((.(((.....)))..))))..)..)))).))))).((.--(((((.....))))).))....)))... ( -22.40) >DroYak_CAF1 248250 74 - 1 CACUUACCGCGGGCAAGGCCAGCCGAAGUGCACUUAACAAAUUCUGUUAACCUUUUUCUU--------------------AAUCAUAAAAUAUU (((((.(.((.(((...))).)).))))))...((((((.....))))))..........--------------------.............. ( -12.30) >consensus GGCUUUCCGCGGGCAAGGCCAGCCGAAGUGCACUUAACAAAUUCGGUUAGCCUUUUCCGUAAAAAAAAGAGUUCAUUCUUAACCAUUAAAUAUU ........(((((.(((((.(((((((..............))))))).))))).))))).................................. (-13.98 = -14.06 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006