| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,830,060 – 14,830,216 |
| Length | 156 |
| Max. P | 0.984617 |
| Location | 14,830,060 – 14,830,176 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -25.60 |
| Energy contribution | -25.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14830060 116 - 27905053 GGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAA----AAAGUCACAGCAAAAUGUUGACAGAAAUGGCAAAUAAAAUUGGAUUCGCUCGUUGCUCUUU .(((((.(((((((.....))))))).........)))))((((((((((.....----.......((((.....)))).((....))...............))).)))..)))).... ( -25.60) >DroSec_CAF1 8230 120 - 1 GGGCAAAUGUUGCACGUAAUGCGACAGUAAAAACGUUGCCAGCAGAGGAAAAAAAGGAAAAAAAAACAGCAAAAUGUUGACAGAAAUGGCAAAUAAAAUUGUAUUCGCUCGUUGCUCUUU .(((((.(((((((.....)))))))((....)).)))))((((((((((................((((.....)))).((....))((((......)))).))).)))..)))).... ( -26.40) >DroSim_CAF1 8393 118 - 1 GGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAGGGAAA--AAAACAGCAAAAUGUUGACAGAAAUGGCAAAUAAAAUUGGAUUCGCUCGUUGCUCUUU .(((((.(((((((.....))))))).........)))))...((((.((...((.(((.--....((((.....)))).((....))...............))).))..)).)))).. ( -27.00) >consensus GGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAAGGAAAAAAAAACAGCAAAAUGUUGACAGAAAUGGCAAAUAAAAUUGGAUUCGCUCGUUGCUCUUU .(((((.(((((((.....))))))).........)))))((((((((((................((((.....)))).((....))...............))).)))..)))).... (-25.60 = -25.60 + -0.00)
| Location | 14,830,100 – 14,830,216 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -28.00 |
| Energy contribution | -28.33 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14830100 116 - 27905053 AUGAGGAAAAUGGGCGGCAUUCAUACGCCAAGCAAUCAACGGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAA----AAAGUCACAGCAAAAUGUUGA ............(((((((((..((((((............)))...(((((((.....))))))))))..)))))))))...............----.......((((.....)))). ( -29.40) >DroSec_CAF1 8270 120 - 1 AUGGGGGAAAUGGGCGGCAUUCAUACGCCAAGCAAUCAACGGGCAAAUGUUGCACGUAAUGCGACAGUAAAAACGUUGCCAGCAGAGGAAAAAAAGGAAAAAAAAACAGCAAAAUGUUGA .(((........((((.........)))).......(((((......(((((((.....))))))).......)))))))).........................((((.....)))). ( -26.02) >DroSim_CAF1 8433 118 - 1 AUGGGGGAAAUGGGCGGCAUUCAUACGCCAAGCAAUCAACGGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAGGGAAA--AAAACAGCAAAAUGUUGA ............(((((((((..((((((............)))...(((((((.....))))))))))..)))))))))....................--....((((.....)))). ( -29.40) >consensus AUGGGGGAAAUGGGCGGCAUUCAUACGCCAAGCAAUCAACGGGCAAAUGUUGCACGUAAUGCGACAGUAAAAAUGUUGCCAGCAGAGGAAAAAAAGGAAAAAAAAACAGCAAAAUGUUGA ............(((((((((..((((((............)))...(((((((.....))))))))))..)))))))))..........................((((.....)))). (-28.00 = -28.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:11 2006