Locus 5638

Sequence ID 3R_DroMel_CAF1
Location 14,829,783 – 14,829,901
Length 118
Max. P 0.866773
window9195

overview

Window 5

Location 14,829,783 – 14,829,901
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.88
Mean single sequence MFE -42.33
Consensus MFE -39.32
Energy contribution -38.77
Covariance contribution -0.55
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.93
SVM decision value 0.85
SVM RNA-class probability 0.866773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14829783 118 - 27905053
CCGACACACCCACGCGAAC--GCGCAUUGCCAAUAAAAGUGGGCAAGUCACGUGAUUCUGAUUUGCCAAGCCCAUACGGUUACGGGCCAUAAAAGGUCAAUGUGGUCGCCGGGCGAGGGU
((....(.(((..((((.(--.(((((((((..........(((((((((........)))))))))..((((..........)))).......)).)))))))))))).))).).)).. ( -42.10)
>DroSec_CAF1 7956 114 - 1
CCGACACACCCACGCG----AACGCACUGCCAAUAAAAGUGGGCAAGUCACGUGAUUCUGAUUUGCCAAGCCC--ACGGCUACAGGCCAUAAAAGGUCAAUGUGGUCGCCAGGCGGUGGU
.............((.----...))((..((..........(((((((((........)))))))))..(((.--.((((((((((((......))))..))))))))...)))))..)) ( -41.60)
>DroSim_CAF1 8115 118 - 1
CCGACACACCCACGCGCACCAACGCACUGCCAAUAAAAGUGGGCAAGUCACGUGAUUCUGAUUUGCCAAGCCC--ACGGCUACAGGCCAUAAAAGGUCAAUGUGGUCGCCAGGCGGUGGU
.............(((......)))((..((..........(((((((((........)))))))))..(((.--.((((((((((((......))))..))))))))...)))))..)) ( -43.30)
>consensus
CCGACACACCCACGCG_AC_AACGCACUGCCAAUAAAAGUGGGCAAGUCACGUGAUUCUGAUUUGCCAAGCCC__ACGGCUACAGGCCAUAAAAGGUCAAUGUGGUCGCCAGGCGGUGGU
.......(((...(((......)))((((((..........(((((((((........))))))))).........((((((((((((......))))..))))))))...))))))))) (-39.32 = -38.77 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:09 2006