| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,828,801 – 14,828,920 |
| Length | 119 |
| Max. P | 0.603022 |
| Location | 14,828,801 – 14,828,920 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -27.39 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14828801 119 - 27905053 UAUCAAUCGAUUUUACAGCCCCGGGGCGAACAUAAAAUGCAACAUCAGAC-CAGACUGGAAAUUGAAUGAAAAAUGCAUCUCACCAAAUGCCACUGCAGUUGGUUUUCCCAGUUGCAGUU ..(((.((((((((...(((....)))..................(((..-....))))))))))).))).....((((........)))).((((((..(((.....)))..)))))). ( -30.60) >DroSec_CAF1 6946 120 - 1 UAUCAAUCGAUUUUACAGCCCCGGGGAGAACAUAAAAUGCAACAUCAGACCCAGACUGGAAAUUGAAUGAAAAAUGCAUCUCACCAAAUGCCACUGCAGUUGGUUUUCCCAGUUGUAGUU ............(((((((....((((((((...((.((((.((((((..((.....))...))).)))......((((........))))...)))).)).)))))))).))))))).. ( -27.40) >DroSim_CAF1 7101 120 - 1 UAUCAAUCGAUUUUACAGCCCCGGGGCGAACAUAAAAUGCAACAUCAGACCCAGACUGGAAAUUGAAUGAAAAAUGCAUCUCACCAAAUGCCACUGCAGUUGGUUUUCCCAGUUGCAGUU ..(((.((((((((...(((....)))..................(((.......))))))))))).))).....((((........)))).((((((..(((.....)))..)))))). ( -30.10) >consensus UAUCAAUCGAUUUUACAGCCCCGGGGCGAACAUAAAAUGCAACAUCAGACCCAGACUGGAAAUUGAAUGAAAAAUGCAUCUCACCAAAUGCCACUGCAGUUGGUUUUCCCAGUUGCAGUU ..(((.((((((((...(((....)))..................(((.......))))))))))).))).....((((........)))).((((((..(((.....)))..)))))). (-27.39 = -27.50 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:06 2006