Locus 5634

Sequence ID 3R_DroMel_CAF1
Location 14,828,125 – 14,828,244
Length 119
Max. P 0.919702
window9188 window9189

overview

Window 8

Location 14,828,125 – 14,828,244
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.14
Mean single sequence MFE -19.07
Consensus MFE -14.16
Energy contribution -15.16
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.74
SVM decision value 0.28
SVM RNA-class probability 0.667131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14828125 119 + 27905053
ACUUCCUCCCCCUCUCUCUCUCUCUCUUUUCAAGUUCAAGUCAAACAUUGGCCAUAAUCUCGGCGCAUCAGCUGCACCACUUUUUAUGCUCGCCUAGCGCACAAUAUUUGAA-UAAACCG
.................................(((....(((((.((((((.........((.(((.....))).)).........(((.....))))).)))).))))).-..))).. ( -16.70)
>DroSec_CAF1 6286 107 + 1
ACUUCCUCCC------UAUCUCACUCUUUUCAAGUUCAAGUCAAACAUUGGCCAUAAUCUCCGCGCGUCAGCUGCACCACUUUUUAUGCUCGC-------ACAAUAUUUGACUUAAACCA
..........------.................(((.((((((((.(((((((((((.....((((....)).))........)))))...))-------.)))).)))))))).))).. ( -19.12)
>DroSim_CAF1 6436 114 + 1
ACUUCCUCCC------UAUCUCUCUCUUUUCAAGUUCAAGUCAAACAUUGGCCAUAAUCUCCGCGCGUCAGCUGCACCACUUUUUAUGCUCGCACAGCGCACAAUAUUUGACUUAAACCG
..........------.................(((.((((((((.((((((..........((((....)).))............(((.....))))).)))).)))))))).))).. ( -21.40)
>consensus
ACUUCCUCCC______UAUCUCUCUCUUUUCAAGUUCAAGUCAAACAUUGGCCAUAAUCUCCGCGCGUCAGCUGCACCACUUUUUAUGCUCGC__AGCGCACAAUAUUUGACUUAAACCG
.................................(((.((((((((.((((((..........))(((..(((...............))))))........)))).)))))))).))).. (-14.16 = -15.16 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,828,125 – 14,828,244
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.14
Mean single sequence MFE -32.10
Consensus MFE -25.99
Energy contribution -27.43
Covariance contribution 1.45
Combinations/Pair 1.03
Mean z-score -2.87
Structure conservation index 0.81
SVM decision value 1.13
SVM RNA-class probability 0.919702
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14828125 119 - 27905053
CGGUUUA-UUCAAAUAUUGUGCGCUAGGCGAGCAUAAAAAGUGGUGCAGCUGAUGCGCCGAGAUUAUGGCCAAUGUUUGACUUGAACUUGAAAAGAGAGAGAGAGAGAGGGGGAGGAAGU
.((((((-.((((((((((.((((...))...(((((....(((((((.....)))))))...)))))))))))))))))..))))))................................ ( -30.60)
>DroSec_CAF1 6286 107 - 1
UGGUUUAAGUCAAAUAUUGU-------GCGAGCAUAAAAAGUGGUGCAGCUGACGCGCGGAGAUUAUGGCCAAUGUUUGACUUGAACUUGAAAAGAGUGAGAUA------GGGAGGAAGU
.((((((((((((((((((.-------((...(((((....(.((((.......)))).)...)))))))))))))))))))))))))................------.......... ( -31.30)
>DroSim_CAF1 6436 114 - 1
CGGUUUAAGUCAAAUAUUGUGCGCUGUGCGAGCAUAAAAAGUGGUGCAGCUGACGCGCGGAGAUUAUGGCCAAUGUUUGACUUGAACUUGAAAAGAGAGAGAUA------GGGAGGAAGU
.((((((((((((((((((.((.(((((((.((((........))))......)))))))........))))))))))))))))))))................------.......... ( -34.40)
>consensus
CGGUUUAAGUCAAAUAUUGUGCGCU__GCGAGCAUAAAAAGUGGUGCAGCUGACGCGCGGAGAUUAUGGCCAAUGUUUGACUUGAACUUGAAAAGAGAGAGAUA______GGGAGGAAGU
.((((((((((((((((((....((.(((..((((........)))).((....))))).))........))))))))))))))))))................................ (-25.99 = -27.43 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:03 2006