Locus 5631

Sequence ID 3R_DroMel_CAF1
Location 14,825,701 – 14,825,821
Length 120
Max. P 0.684917
window9178

overview

Window 8

Location 14,825,701 – 14,825,821
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -34.70
Consensus MFE -34.70
Energy contribution -34.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 1.00
SVM decision value 0.31
SVM RNA-class probability 0.684917
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14825701 120 + 27905053
GAGAUACCGGCAAUCUCGAUGUUUGUCCCAGCAAUUAGCAGCCUCAGUGGCAUUGCAGUAGCCGUGAUUAUCACCUACCGCCCCAUGUACCAUGCUGAAUGCAAAUGCAAAGGCAAAUAU
(((((.......))))).(((((((((.(((((....((((((.....)))...((.((((..(((.....))))))).))....)))....)))))..(((....)))..))))))))) ( -34.70)
>DroSec_CAF1 3880 120 + 1
GAGAUACCGGCAAUCUCGAUGUUUGUCCCAGCAAUUAGCAGCCUCAGUGGCAGUGCAGUAGCCGUGAUUAUCACCUACCGCCCCAUGUACCAUGCUGAAUGCAAAUGCAAAGGCAAAUAU
(((((.......))))).(((((((((.(((((....((((((.....)))...((.((((..(((.....))))))).))....)))....)))))..(((....)))..))))))))) ( -34.70)
>DroSim_CAF1 3996 120 + 1
GAGAUACCGGCAAUCUCGAUGUUUGUCCCAGCAAUUAGCAGCCUCAGUGGCAGUGCAGUAGCCGUGAUUAUCACCUACCGCCCCAUGUACCAUGCUGAAUGCAAAUGCAAAGGCAAAUAU
(((((.......))))).(((((((((.(((((....((((((.....)))...((.((((..(((.....))))))).))....)))....)))))..(((....)))..))))))))) ( -34.70)
>consensus
GAGAUACCGGCAAUCUCGAUGUUUGUCCCAGCAAUUAGCAGCCUCAGUGGCAGUGCAGUAGCCGUGAUUAUCACCUACCGCCCCAUGUACCAUGCUGAAUGCAAAUGCAAAGGCAAAUAU
(((((.......))))).(((((((((.(((((....((((((.....)))...((.((((..(((.....))))))).))....)))....)))))..(((....)))..))))))))) (-34.70 = -34.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:54 2006