Locus 5629

Sequence ID 3R_DroMel_CAF1
Location 14,824,037 – 14,824,157
Length 120
Max. P 0.751774
window9171

overview

Window 1

Location 14,824,037 – 14,824,157
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -34.23
Consensus MFE -34.23
Energy contribution -34.23
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 1.00
SVM decision value 0.48
SVM RNA-class probability 0.751774
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14824037 120 - 27905053
AUUUAGCACUAAUCUCCAGCAGGCUGGCUCCUCUUUCUGCUCCAACUCCCUUUGCCACGUCUGACUGCCACACGAGUGCUGGGUCCUUGAGACACCACAAACUUGUGGCAAGCUCUAGCG
((((((((((......((((((((((((.........................)))).))))).))).......)))))))))).((.(((...(((((....)))))....))).)).. ( -34.63)
>DroSec_CAF1 2191 120 - 1
AUUUAGCACUAAUCUCCAGCAGGCUGGCUCCUCUUUCUGCUCCAACUCCUUUCGCCACGUCUGACUGCCACACGAGUGCUGGGUCCUUGAGACACCACAAACUUGUGGCAAGCUCUAGCG
((((((((((......((((((((((((.........................)))).))))).))).......)))))))))).((.(((...(((((....)))))....))).)).. ( -34.03)
>DroSim_CAF1 2325 120 - 1
AUUUAGCACUAAUCUCCAGCAGGCUGGCUCCUCUUUCUGCUCCAACUCCUUUCGCCACGUCUGACUGCCACACGAGUGCUGGGUCCUUGAGACACCACAAACUUGUGGCAAGCUCUAGCG
((((((((((......((((((((((((.........................)))).))))).))).......)))))))))).((.(((...(((((....)))))....))).)).. ( -34.03)
>consensus
AUUUAGCACUAAUCUCCAGCAGGCUGGCUCCUCUUUCUGCUCCAACUCCUUUCGCCACGUCUGACUGCCACACGAGUGCUGGGUCCUUGAGACACCACAAACUUGUGGCAAGCUCUAGCG
((((((((((......((((((((((((.........................)))).))))).))).......)))))))))).((.(((...(((((....)))))....))).)).. (-34.23 = -34.23 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:47 2006