Locus 5627

Sequence ID 3R_DroMel_CAF1
Location 14,822,198 – 14,822,318
Length 120
Max. P 0.735707
window9168

overview

Window 8

Location 14,822,198 – 14,822,318
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -29.50
Consensus MFE -28.30
Energy contribution -28.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.96
SVM decision value 0.44
SVM RNA-class probability 0.735707
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14822198 120 + 27905053
AAUGAUGGAUUUGUUGAAUUUCAACAGCAACGUGUGAACUGCGGCGUGGCAGACAGAGAAAUUCGAGAUUUUGUGUGGCUCCAGAAAACUGGAAUUACUAAAGAAAUGAGCAGAUUUGGA
......((((((((((((((((.(((......)))...((((......)))).....)))))))...(((((..((((.(((((....))))).))))....))))).)))))))))... ( -29.30)
>DroSec_CAF1 331 120 + 1
AAUGAUGGAUUUGUUGAAUUUCAACAGCAACGUGUGAACUGCGGCAAAGCAGACAGAGAAAUUCGAGAUUUUGUGGGGAUCCAGAAGACUGGAAUUACUAAAGAAAUGAGCAGAUUUGGA
......(((((((((..(((((................((((......))))....((.(((((.((.((((.(((....))).)))))).))))).))...))))).)))))))))... ( -29.30)
>DroSim_CAF1 486 120 + 1
AAUGAUGGAUUUGUUGAAUUUCAACAGCAACGUGUGAACUGCGGCCAAGCAGACAGAGAAAUUCGAGAUUUUGUGUGGCUCCAGAAAACUGGAAUUACUAAAGAAAUGAGCAGAUUUGGA
......((((((((((((((((.(((......)))...((((......)))).....)))))))...(((((..((((.(((((....))))).))))....))))).)))))))))... ( -29.90)
>consensus
AAUGAUGGAUUUGUUGAAUUUCAACAGCAACGUGUGAACUGCGGCAAAGCAGACAGAGAAAUUCGAGAUUUUGUGUGGCUCCAGAAAACUGGAAUUACUAAAGAAAUGAGCAGAUUUGGA
......((((((((((((((((.(((......)))...((((......)))).....)))))))...(((((..((((.(((((....))))).))))....))))).)))))))))... (-28.30 = -28.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:44 2006